Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MalR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Malate utilization
Effector: MalK, sensor histidine kinase (malate)
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42 3 2
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125 1 1
Bacillus licheniformis DSM 13 3 2
Bacillus pumilus SAFR-032 3 2
Bacillus subtilis subsp. subtilis str. 168 4 3
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yflS
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -89
score = 5.16103
sequence = TTTTTTAATTA-(9)-TTTATTAACTT

Gene: RBAM_007730: Putative malate transporter
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
*
Bacillus halodurans C-125

Site:
position = -46
score = 7.66374
sequence = CTACTTTTTTT-(6)-TTAGGTTAATC

Site:
position = -63
score = 7.45
sequence = TTGCTCTTTTA-(6)-CTACTTTTTTT

Gene: BH3327: Putative malate transporter
 
Bacillus licheniformis DSM 13

Gene: BLi00780: Putative malate transporter
 
Bacillus pumilus SAFR-032
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -91
score = 5.16103
sequence = TTTTTTAATTA-(9)-TTTATTAACTT

Gene: BSU07570: Putative malate transporter
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative malate transporter
 
CRON 2.
maeN
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579

Gene: BC0579: Malate Na(+) symporter
 
Bacillus clausii KSM-K16

Gene: ABC0917: Malate Na(+) symporter
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -98
score = 9.42632
sequence = TTAATTTAATT-(9)-TTATTTTAATT

Gene: BLi03342: Malate Na(+) symporter
*
Bacillus pumilus SAFR-032

Site:
position = -96
score = 8.33439
sequence = TTATTTTACTT-(9)-TTAATTTAGTT

Gene: BPUM_2827: Malate Na(+) symporter
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -96
score = 7.30507
sequence = TTAATTTAATT-(9)-TTTTTTAACTT

Gene: BSU31580: Malate Na(+) symporter
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Malate Na(+) symporter
 
CRON 3.
ywkA
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -206
score = -0.8026
sequence = AACTTAAAAAA-(10)-AAATTAAGTAA

Gene: RBAM_034210: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -242
score = -0.784333
sequence = AACTTAATTAA-(10)-AAATTAACTAA

Gene: BLi03953: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
*
Bacillus pumilus SAFR-032

Site:
position = -209
score = 0.460015
sequence = AAATTAAATAA-(10)-AAATTATCTAA

Gene: BPUM_3348: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -156
score = -1.00693
sequence = AATTTAAATAA-(10)-AAATTAAGTAA

Gene: BSU37050: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
NAD-dependent malate dehydrogenase (EC 1.1.1.38)
ywkB
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034200: Malate permease
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03952: Malate permease
 
Bacillus pumilus SAFR-032

Gene: BPUM_3347: Malate permease
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37040: Malate permease
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Malate permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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