Regulog MalR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | CitB |
| Regulation mode: | activator |
| Biological process: | Malate utilization |
| Effector: | MalK, sensor histidine kinase (malate) |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - CitB
- By effector - MalK, sensor histidine kinase (malate)
- By pathway - Malate utilization
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | 3 | 2 |
| Bacillus cereus ATCC 14579 | ||
| Bacillus clausii KSM-K16 | ||
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 3 | 2 |
| Bacillus pumilus SAFR-032 | 3 | 2 |
| Bacillus subtilis subsp. subtilis str. 168 | 4 | 3 |
| Geobacillus kaustophilus HTA426 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| yflS |
|
*
Bacillus amyloliquefaciens FZB42 Site: position = -89 score = 5.16103 sequence = TTTTTTAATTA-(9)-TTTATTAACTT Gene: RBAM_007730: Putative malate transporter |
|
|
*
Bacillus halodurans C-125 Site: position = -46 score = 7.66374 sequence = CTACTTTTTTT-(6)-TTAGGTTAATC Site: position = -63 score = 7.45 sequence = TTGCTCTTTTA-(6)-CTACTTTTTTT Gene: BH3327: Putative malate transporter |
Gene: BLi00780: Putative malate transporter |
|
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -91 score = 5.16103 sequence = TTTTTTAATTA-(9)-TTTATTAACTT Gene: BSU07570: Putative malate transporter |
|
|
|
Putative malate transporter |
| CRON 2. | ||||||||||||
| maeN |
|
|
Gene: BC0579: Malate Na(+) symporter |
Gene: ABC0917: Malate Na(+) symporter |
|
*
Bacillus licheniformis DSM 13 Site: position = -98 score = 9.42632 sequence = TTAATTTAATT-(9)-TTATTTTAATT Gene: BLi03342: Malate Na(+) symporter |
*
Bacillus pumilus SAFR-032 Site: position = -96 score = 8.33439 sequence = TTATTTTACTT-(9)-TTAATTTAGTT Gene: BPUM_2827: Malate Na(+) symporter |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -96 score = 7.30507 sequence = TTAATTTAATT-(9)-TTTTTTAACTT Gene: BSU31580: Malate Na(+) symporter |
|
|
|
Malate Na(+) symporter |
| CRON 3. | ||||||||||||
| ywkA |
|
*
Bacillus amyloliquefaciens FZB42 Site: position = -206 score = -0.8026 sequence = AACTTAAAAAA-(10)-AAATTAAGTAA Gene: RBAM_034210: NAD-dependent malate dehydrogenase (EC 1.1.1.38) |
|
|
|
*
Bacillus licheniformis DSM 13 Site: position = -242 score = -0.784333 sequence = AACTTAATTAA-(10)-AAATTAACTAA Gene: BLi03953: NAD-dependent malate dehydrogenase (EC 1.1.1.38) |
*
Bacillus pumilus SAFR-032 Site: position = -209 score = 0.460015 sequence = AAATTAAATAA-(10)-AAATTATCTAA Gene: BPUM_3348: NAD-dependent malate dehydrogenase (EC 1.1.1.38) |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -156 score = -1.00693 sequence = AATTTAAATAA-(10)-AAATTAAGTAA Gene: BSU37050: NAD-dependent malate dehydrogenase (EC 1.1.1.38) |
|
|
|
NAD-dependent malate dehydrogenase (EC 1.1.1.38) |
| ywkB |
|
Gene: RBAM_034200: Malate permease |
|
|
|
Gene: BLi03952: Malate permease |
Gene: BPUM_3347: Malate permease |
Gene: BSU37040: Malate permease |
|
|
|
Malate permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |