Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Bifidobacterium longum NCC2705

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AbfR Arabinose oligosaccharide utilization 4 2
TF AouR Arabinose oligosaccharide utilization 3 3
TF AraQ Central carbohydrate metabolism; Arabinose utilization; Arabinose oligosaccharide utilization 15 13
TF ArgR Arginine Arginine biosynthesis 3 5
TF BDP_2071 Carbohydrate metabolism 2 2
TF BL0176 Carbohydrate metabolism 4 5
TF BL0185 Carbohydrate metabolism 5 9
TF BL0610 Carbohydrate metabolism 2 2
TF BLA_0357 Galactooligosaccharide utilization 1 2
TF BgaR Beta-galactosides Galactosides utilization 5 5
TF BgrT2 Beta-glucosides utilization 1 1
TF Crp Tricarboxylic acid cycle; Energy metabolism 10 8
TF CscR Sucrose Sucrose utilization 1 2
TF CsoR Copper ion, (Cu+) Copper homeostasis 2 2
TF FruR Fructose utilization 1 1
TF GalR Galactose utilization 2 3
TF GlcR Glucose utilization 1 1
TF GlxR D-glycerate Glycerate utilization 2 2
TF GosR Galactobiose Galactooligosaccharide utilization; Galactan utilization 5 4
TF HrcA Heat shock Heat shock response 3 5
TF LacR Lactose Lactose utilization 2 4
TF LexA DNA damage SOS response 9 10
TF LtbR Leucine biosynthesis 2 2
TF MalR1/MalR2/MalR3 Maltose Maltose utilization; Maltodextrin utilization 9 10
TF MalR4 Maltose Maltose utilization; Maltodextrin utilization 4 4
TF NagR N-acetylglucosamine-6-phosphate Lacto-N-biose utilization; Galacto-N-biose utilization 4 6
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 1 1
TF RafR Raffinose utilization 3 2
TF RbsR2 Ribose Ribonucleoside utilization 1 2
TF ScrR Sucrose Sucrose utilization 2 3
TF XylR Xylose Xylose utilization 3 4
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 4
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