Regulon of LiuR in Rhodospirillum centenum SW
| Regulator type: | Transcription factor |
| TF locus tag: | RC1_1949 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Rhodospirillales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Rhodospirillales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -263
Score: 5.7 Sequence: CTTTACGATTACGTAAAC
Position: -257
Score: 5.7 Sequence: GATTACGTAAACGTAAAC
Locus tag: RC1_4110
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: RC1_4109
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: RC1_4108
Name: null Funciton: hypothetical protein
Locus tag: RC1_4107
Name: paaH Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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hypothetical protein
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paaH
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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Position: -80
Score: 5.3 Sequence: ACTTACCTTTACGTAAAC
Position: -74
Score: 6.1 Sequence: CTTTACGTAAACGTAAAC
Locus tag: RC1_1949
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: RC1_1948
Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: RC1_1947
Name: acdB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: RC1_1946
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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acdA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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acdB
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Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
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acdH
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -39
Score: 5.6 Sequence: ATTTACCTTTACGTAAAG
Position: -33
Score: 5.3 Sequence: CTTTACGTAAAGGTAACC
Locus tag: RC1_2763
Name: null Funciton: alpha/beta hydrolase superfamily protein |
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alpha/beta hydrolase superfamily protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |