Regulon of LiuR in Rhodospirillum rubrum ATCC 11170
| Regulator type: | Transcription factor |
| TF locus tag: | Rru_A1994, Rru_A1311 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Rhodospirillales |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Rhodospirillales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -194
Score: 5.8 Sequence: TTTGACGTTTACGTAAAC
Position: -188
Score: 5 Sequence: GTTTACGTAAACGGAAGA
Locus tag: Rru_A1948
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rru_A1947
Name: null Funciton: nucleotidyltransferase-like
Locus tag: Rru_A1946
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Rru_A1945
Name: csgA Funciton: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.184 )
Locus tag: Rru_A1944
Name: Rru_A1944 Funciton: 2-hydroxychromene-2-carboxylate isomerase (EC 5.3.99.-)
Locus tag: Rru_A1943
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Rru_A1942
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Rru_A1941
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Rru_A1940
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
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nucleotidyltransferase-like
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ivdA
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Acetyl-CoA C-acyltransferase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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csgA
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Short-chain dehydrogenase/reductase SDR( EC:1.1.1.184 )
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Rru_A1944
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2-hydroxychromene-2-carboxylate isomerase (EC 5.3.99.-)
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liuD
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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liuB
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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Position: -132
Score: 5.8 Sequence: TTTGACGTTTACGTAAAC
Position: -126
Score: 4.7 Sequence: GTTTACGTAAACGGAAGT
Locus tag: Rru_A1835
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Rru_A1834
Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
Locus tag: Rru_A1833
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
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ivdC
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Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
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ivdE
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Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
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ivdF
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3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
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Position: -108
Score: 5.7 Sequence: CTTTACGTTTGCGTTAAG
Locus tag: Rru_A3510
Name: livG Funciton: Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
Locus tag: Rru_A3509
Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: Rru_A3508
Name: livH Funciton: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
Locus tag: Rru_A3507
Name: livM Funciton: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
Locus tag: Rru_A3506
Name: livK Funciton: ABC-type branched-chain amino acid transport systems, periplasmic component
Locus tag: Rru_A3505
Name: livF Funciton: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
Locus tag: Rru_A3504
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
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livG
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Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
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fadD
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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livH
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High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
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livM
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Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
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livK
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ABC-type branched-chain amino acid transport systems, periplasmic component
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livF
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Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
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paaK
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
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Position: -26
Score: 5.2 Sequence: CTTGCCCTTTACGTAAAG
Locus tag: Rru_A1994
Name: liuR2 Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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liuR2
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |