Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Rhodospirillum rubrum ATCC 11170

Properties
Regulator type: Transcription factor
TF locus tag: Rru_A1994, Rru_A1311
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhodospirillales
Statistics of regulated genes:
- Genes 20
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -194
Score: 5.8
Sequence: TTTGACGTTTACGTAAAC
Position: -188
Score: 5
Sequence: GTTTACGTAAACGGAAGA
Locus tag: Rru_A1948
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rru_A1947
Name: null
Funciton: nucleotidyltransferase-like
Locus tag: Rru_A1946
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Rru_A1945
Name: csgA
Funciton: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.184 )
Locus tag: Rru_A1944
Name: Rru_A1944
Funciton: 2-hydroxychromene-2-carboxylate isomerase (EC 5.3.99.-)
Locus tag: Rru_A1943
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Rru_A1942
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Rru_A1941
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Rru_A1940
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Rru_A1948
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Rru_A1947
nucleotidyltransferase-like
Rru_A1946
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Rru_A1945
csgA
Short-chain dehydrogenase/reductase SDR( EC:1.1.1.184 )
Rru_A1944
Rru_A1944
2-hydroxychromene-2-carboxylate isomerase (EC 5.3.99.-)
Rru_A1943
liuD
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Rru_A1942
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Rru_A1941
liuB
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Rru_A1940
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Position: -132
Score: 5.8
Sequence: TTTGACGTTTACGTAAAC
Position: -126
Score: 4.7
Sequence: GTTTACGTAAACGGAAGT
Locus tag: Rru_A1835
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Rru_A1834
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
Locus tag: Rru_A1833
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Rru_A1835
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Rru_A1834
ivdE
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
Rru_A1833
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Position: -108
Score: 5.7
Sequence: CTTTACGTTTGCGTTAAG
Locus tag: Rru_A3510
Name: livG
Funciton: Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
Locus tag: Rru_A3509
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: Rru_A3508
Name: livH
Funciton: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
Locus tag: Rru_A3507
Name: livM
Funciton: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
Locus tag: Rru_A3506
Name: livK
Funciton: ABC-type branched-chain amino acid transport systems, periplasmic component
Locus tag: Rru_A3505
Name: livF
Funciton: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
Locus tag: Rru_A3504
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Rru_A3510
livG
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
Rru_A3509
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Rru_A3508
livH
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
Rru_A3507
livM
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
Rru_A3506
livK
ABC-type branched-chain amino acid transport systems, periplasmic component
Rru_A3505
livF
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
Rru_A3504
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Position: -26
Score: 5.2
Sequence: CTTGCCCTTTACGTAAAG
Locus tag: Rru_A1994
Name: liuR2
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Rru_A1994
liuR2
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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