Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ScrR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Sucrose utilization
Effector: Sucrose
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 23 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium longum subsp. infantis ATCC 15697 3 2
Bifidobacterium adolescentis ATCC 15703 2 1
Bifidobacterium angulatum DSM 20098 3 1
Bifidobacterium animalis subsp. lactis AD011 3 2
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213 4 2
Bifidobacterium dentium Bd1 7 4
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705 4 2
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
BDP_0112
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -147
score = 6.25823
sequence = TTATCGAACCGGTTTGACAG

Gene: BDP_0112: sugar ABC uptake system, solute-binding protein
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
sugar ABC uptake system, solute-binding protein
BDP_0113
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1

Gene: BDP_0113: sugar ABC transport system, permease component
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
sugar ABC transport system, permease component
BDP_0114
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1

Gene: BDP_0114: sugar ABC uptake system, permease component
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
sugar ABC uptake system, permease component
 
CRON 2.
BDP_0111
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -205
score = 6.25823
sequence = CTGTCAAACCGGTTCGATAA

Gene: BDP_0111: oligo-1,6-glucosidase
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
oligo-1,6-glucosidase
 
CRON 3.
scrP
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -156
score = 6.38628
sequence = GCATCAAACCGGTTCGACAC

Site:
position = -91
score = 6.66281
sequence = ATATCAAACCGGTTCGATAC

Gene: Blon_0128: Sucrose phosphorylase (EC 2.4.1.7)
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -91
score = 6.77745
sequence = ATATCGAACCGGTTCGACAC

Gene: BAD_0078: Sucrose phosphorylase (EC 2.4.1.7)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -138
score = 6.78731
sequence = GTGTCGAACCGGTTCGACAC

Site:
position = -82
score = 6.50736
sequence = GAATCGAACCGGTTCGATAG

Gene: BIFANG_00303: Sucrose phosphorylase (EC 2.4.1.7)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -106
score = 6.23379
sequence = TACTCGAACCGGTTCGATAC

Site:
position = -265
score = 6.16435
sequence = GTATCGAACCGGTTTGACGA

Site:
position = -173
score = 6.66281
sequence = ATATCGAACCGGTTTGATAC

Gene: BLA_0129: Sucrose phosphorylase (EC 2.4.1.7)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100000305: Sucrose phosphorylase (EC 2.4.1.7)
*
Bifidobacterium breve DSM 20213

Site:
position = -156
score = 6.38628
sequence = GCATCAAACCGGTTCGACAC

Site:
position = -91
score = 6.66281
sequence = ATATCAAACCGGTTCGATAC

Gene: BIFBRE_01891: Sucrose phosphorylase (EC 2.4.1.7)
*
Bifidobacterium dentium Bd1

Site:
position = -87
score = 6.76758
sequence = ATATCGAACCGGTTCGATAT

Gene: BDP_0109: Sucrose phosphorylase (EC 2.4.1.7)
 
Bifidobacterium gallicum DSM 20093
*
Bifidobacterium longum NCC2705

Site:
position = -105
score = 6.895
sequence = ATATCGAACCGGTTCGATAC

Site:
position = -170
score = 5.71668
sequence = GCATCTAATCGGTTCGACAC

Gene: BL0536: Sucrose phosphorylase (EC 2.4.1.7)
 
Gardnerella vaginalis 409-05
Sucrose phosphorylase (EC 2.4.1.7)
scrT1
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0129: Sucrose permease, MFS family
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0079: Sucrose permease, MFS family
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00305: Sucrose permease, MFS family
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100000310: Sucrose permease, MFS family
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_01892: Sucrose permease, MFS family
 
Bifidobacterium dentium Bd1

Gene: BDP_0116: Sucrose permease, MFS family
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705

Gene: BL0534: Sucrose permease, MFS family
 
Gardnerella vaginalis 409-05
Sucrose permease, MFS family
scrR
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -99
score = 5.88173
sequence = CTGTCGAACAGGTTCGAGAG

Gene: Blon_0127: Sucrose operon repressor, LacI family
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0075: Sucrose operon repressor, LacI family
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00300: Sucrose operon repressor, LacI family
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -61
score = 6.16435
sequence = TCGTCAAACCGGTTCGATAC

Site:
position = -220
score = 6.23379
sequence = GTATCGAACCGGTTCGAGTA

Site:
position = -153
score = 6.66281
sequence = GTATCAAACCGGTTCGATAT

Gene: BLA_0128: Sucrose operon repressor, LacI family
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100000300: Sucrose operon repressor, LacI family
*2
Bifidobacterium breve DSM 20213

Site:
position = -95
score = 5.88173
sequence = CTGTCGAACAGGTTCGAGAG

Gene: BIFBRE_01889: Sucrose operon repressor, LacI family

Gene: BIFBRE_01893: Sucrose operon repressor, LacI family
 
Bifidobacterium dentium Bd1

Gene: BDP_0102: Sucrose operon repressor, LacI family
 
Bifidobacterium gallicum DSM 20093
*2
Bifidobacterium longum NCC2705

Site:
position = -99
score = 5.88173
sequence = CTGTCGAACAGGTTCGAGAG

Gene: BL0546: Sucrose operon repressor, LacI family

Gene: BL0533: Sucrose operon repressor, LacI family
 
Gardnerella vaginalis 409-05
Sucrose operon repressor, LacI family
scrT2
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00304: Sucrose permease, MFS family
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0130: Sucrose permease, MFS family
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -50
score = 7.02242
sequence = GTATCGAACCGGTTCGATAC

Site:
position = -113
score = 6.77745
sequence = ATATCGAACCGGTTCGACAC

Gene: BDP_0115: Sucrose permease, MFS family
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Sucrose permease, MFS family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD