Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MsmR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbohydrate metabolism
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium longum subsp. infantis ATCC 15697 5 2
Bifidobacterium adolescentis ATCC 15703 5 2
Bifidobacterium angulatum DSM 20098 2 2
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1 3 2
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
msmR
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -162
score = 5.74008
sequence = TTAGTGAAACGTTTCGACGA

Site:
position = -149
score = 5.51724
sequence = TCGACGAAACGATTCGATAA

Gene: Blon_0042: Multiple sugar utilization transcriptional regulator MsmR, LacI family
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -70
score = 5.89076
sequence = TAAGTGAAACGTTTCGACGA

Site:
position = -57
score = 5.51724
sequence = TCGACGAAACGATTCGATAA

Gene: BAD_1584: Multiple sugar utilization transcriptional regulator MsmR, LacI family
*
Bifidobacterium angulatum DSM 20098

Site:
position = -132
score = 5.89076
sequence = TAAGTGAAACGTTTCGACGA

Site:
position = -119
score = 5.2354
sequence = TCGACGAAACGATTCGACAA

Gene: BIFANG_01794: Multiple sugar utilization transcriptional regulator MsmR, LacI family
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -71
score = 6.29921
sequence = TTATTGAAACGTTTCGACGA

Site:
position = -58
score = 5.66791
sequence = TCGACGAAACGATTCGATTA

Gene: BDP_2166: Multiple sugar utilization transcriptional regulator MsmR, LacI family
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Multiple sugar utilization transcriptional regulator MsmR, LacI family
 
CRON 2.
msmE
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -196
score = 6.01764
sequence = TAATCGAAACGATTCGAAAG

Site:
position = -108
score = 6.10343
sequence = TCGTCGAAACGTTTCGAAAA

Gene: Blon_0043: Multiple sugar ABC transporter, substrate-binding protein
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -186
score = 6.73173
sequence = TAATCGAAACGTTTCAATGA

Site:
position = -78
score = 6.04557
sequence = TCATCGAAACGTTTCAATAC

Gene: BAD_1585: Multiple sugar ABC transporter, substrate-binding protein
*
Bifidobacterium angulatum DSM 20098

Site:
position = -168
score = 5.53742
sequence = AAATCGAAACGATTCGATAT

Site:
position = -85
score = 6.98191
sequence = TAATCGAAACGTTTCAATTA

Gene: BIFANG_01793: Multiple sugar ABC transporter, substrate-binding protein
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Multiple sugar ABC transporter, substrate-binding protein
msmG
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0044: Multiple sugar ABC transporter, permease protein 1
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1586: Multiple sugar ABC transporter, permease protein 1
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01791: Multiple sugar ABC transporter, permease protein 1
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Multiple sugar ABC transporter, permease protein 1
msmF
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0045: Multiple sugar ABC transporter, permease protein 2
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1587: Multiple sugar ABC transporter, permease protein 2
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01790: Multiple sugar ABC transporter, permease protein 2
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -242
score = 6.54939
sequence = TAATCGAAACGTTTCAACAA

Gene: BDP_2164: Multiple sugar ABC transporter, permease protein 2
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Multiple sugar ABC transporter, permease protein 2
PF11175
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0046: Protein of unknown function (DUF2961)
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1588: Protein of unknown function (DUF2961)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01789: Protein of unknown function (DUF2961)
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1

Gene: BDP_2163: Protein of unknown function (DUF2961)
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Protein of unknown function (DUF2961)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise