Regulog MsmR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Carbohydrate metabolism
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Carbohydrate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697	5	2
Bifidobacterium adolescentis ATCC 15703	5	2
Bifidobacterium angulatum DSM 20098	2	2
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	3	2
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
msmR	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -162 score = 5.74008 sequence = TTAGTGAAACGTTTCGACGA Site: position = -149 score = 5.51724 sequence = TCGACGAAACGATTCGATAA Gene: Blon_0042: Multiple sugar utilization transcriptional regulator MsmR, LacI family	* Bifidobacterium adolescentis ATCC 15703 Site: position = -70 score = 5.89076 sequence = TAAGTGAAACGTTTCGACGA Site: position = -57 score = 5.51724 sequence = TCGACGAAACGATTCGATAA Gene: BAD_1584: Multiple sugar utilization transcriptional regulator MsmR, LacI family	* Bifidobacterium angulatum DSM 20098 Site: position = -132 score = 5.89076 sequence = TAAGTGAAACGTTTCGACGA Site: position = -119 score = 5.2354 sequence = TCGACGAAACGATTCGACAA Gene: BIFANG_01794: Multiple sugar utilization transcriptional regulator MsmR, LacI family	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -71 score = 6.29921 sequence = TTATTGAAACGTTTCGACGA Site: position = -58 score = 5.66791 sequence = TCGACGAAACGATTCGATTA Gene: BDP_2166: Multiple sugar utilization transcriptional regulator MsmR, LacI family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Multiple sugar utilization transcriptional regulator MsmR, LacI family

CRON 2.
msmE	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -196 score = 6.01764 sequence = TAATCGAAACGATTCGAAAG Site: position = -108 score = 6.10343 sequence = TCGTCGAAACGTTTCGAAAA Gene: Blon_0043: Multiple sugar ABC transporter, substrate-binding protein	* Bifidobacterium adolescentis ATCC 15703 Site: position = -186 score = 6.73173 sequence = TAATCGAAACGTTTCAATGA Site: position = -78 score = 6.04557 sequence = TCATCGAAACGTTTCAATAC Gene: BAD_1585: Multiple sugar ABC transporter, substrate-binding protein	* Bifidobacterium angulatum DSM 20098 Site: position = -168 score = 5.53742 sequence = AAATCGAAACGATTCGATAT Site: position = -85 score = 6.98191 sequence = TAATCGAAACGTTTCAATTA Gene: BIFANG_01793: Multiple sugar ABC transporter, substrate-binding protein	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Multiple sugar ABC transporter, substrate-binding protein
msmG	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0044: Multiple sugar ABC transporter, permease protein 1	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1586: Multiple sugar ABC transporter, permease protein 1	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01791: Multiple sugar ABC transporter, permease protein 1	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Multiple sugar ABC transporter, permease protein 1
msmF	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0045: Multiple sugar ABC transporter, permease protein 2	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1587: Multiple sugar ABC transporter, permease protein 2	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01790: Multiple sugar ABC transporter, permease protein 2	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -242 score = 6.54939 sequence = TAATCGAAACGTTTCAACAA Gene: BDP_2164: Multiple sugar ABC transporter, permease protein 2	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Multiple sugar ABC transporter, permease protein 2
PF11175	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0046: Protein of unknown function (DUF2961)	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1588: Protein of unknown function (DUF2961)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01789: Protein of unknown function (DUF2961)	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2163: Protein of unknown function (DUF2961)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Protein of unknown function (DUF2961)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MsmR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --