Regulog PhsR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LuxR
Regulation mode:	activator
Biological process:	Thiosulfate reduction
Effector:	Thiosulfate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PhsR
By TF family - LuxR
By effector - Thiosulfate
By pathway - Thiosulfate reduction

Statistics of regulated genes
Genome	Genes	Operons
Shewanella amazonensis SB2B	3	1
Shewanella baltica OS155	2	1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400	3	1
Shewanella halifaxensis HAW-EB4	3	1
Shewanella loihica PV-4	3	1
Shewanella oneidensis MR-1	3	1
Shewanella pealeana ATCC 700345	3	1
Shewanella piezotolerans WP3	3	1
Shewanella putrefaciens CN-32	2	1
Shewanella sediminis HAW-EB3	3	1
Shewanella sp ANA-3	3	1
Shewanella sp MR-4	3	1
Shewanella sp MR-7	3	1
Shewanella sp W3-18-1	2	1
Shewanella woodyi ATCC 51908

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
phsA	* Shewanella amazonensis SB2B Site: position = -135 score = 6.14927 sequence = CGCTATGTGGTTTTCCACAATATC Gene: Sama_3177: Thiosulfate reductase precursor (EC 1.-.-.-)	Shewanella baltica OS155	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -154 score = 6.46712 sequence = CTCAATGTGGTTTACCACAATACC Gene: Sfri_1999: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella halifaxensis HAW-EB4 Site: position = -239 score = 6.25157 sequence = CAATATGTGGTTTACCACAATTTA Site: position = -145 score = 6.35486 sequence = CAGTATGTGGTTTACCACAATATC Gene: Shal_3127: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella loihica PV-4 Site: position = -131 score = 6.61073 sequence = GCCTATGTGGTTTACCACAATACC Gene: Shew_0608: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella oneidensis MR-1 Site: position = -207 score = 6.62689 sequence = GCCTATGTGGTTTACCACAATAGC Gene: SO4062: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella pealeana ATCC 700345 Site: position = -238 score = 6.22007 sequence = CTTTATGTGGTTTACCACAATTTA Site: position = -144 score = 5.91373 sequence = CTGTATGTGGTTTACCACAATATT Gene: Spea_3039: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella piezotolerans WP3 Site: position = -248 score = 6.30563 sequence = CGATATGTGGTTTACCACAATAGA Site: position = -153 score = 6.22857 sequence = TGAAATGTGGTTTACCACAATATT Gene: swp_1238: Thiosulfate reductase precursor (EC 1.-.-.-)	Shewanella putrefaciens CN-32	* Shewanella sediminis HAW-EB3 Site: position = -159 score = 6.61073 sequence = GCCTATGTGGTTTACCACAATACC Gene: Ssed_4047: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella sp ANA-3 Site: position = -209 score = 6.66704 sequence = GCCTATGTGGTTTACCACAATATC Gene: Shewana3_3619: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella sp MR-4 Site: position = -204 score = 6.35442 sequence = TGCCATGTGGTTTACCACAATATC Gene: Shewmr4_3444: Thiosulfate reductase precursor (EC 1.-.-.-)	* Shewanella sp MR-7 Site: position = -204 score = 6.35442 sequence = TGCCATGTGGTTTACCACAATATC Gene: Shewmr7_0507: Thiosulfate reductase precursor (EC 1.-.-.-)	Shewanella sp W3-18-1	Shewanella woodyi ATCC 51908	Thiosulfate reductase precursor (EC 1.-.-.-)
phsB	Shewanella amazonensis SB2B Gene: Sama_3176: Thiosulfate reductase electron transport protein phsB	* Shewanella baltica OS155 Site: position = -2511 score = 6.42543 sequence = CCCCATGTGGTTTACCACAATATC Gene: Sbal_3780: Thiosulfate reductase electron transport protein phsB	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2000: Thiosulfate reductase electron transport protein phsB	Shewanella halifaxensis HAW-EB4 Gene: Shal_3126: Thiosulfate reductase electron transport protein phsB	Shewanella loihica PV-4 Gene: Shew_0607: Thiosulfate reductase electron transport protein phsB	Shewanella oneidensis MR-1 Gene: SO4061: Thiosulfate reductase electron transport protein phsB	Shewanella pealeana ATCC 700345 Gene: Spea_3038: Thiosulfate reductase electron transport protein phsB	Shewanella piezotolerans WP3 Gene: swp_1239: Thiosulfate reductase electron transport protein phsB	* Shewanella putrefaciens CN-32 Site: position = -2484 score = 6.59521 sequence = CCCTATGTGGTTTACCACAATATC Gene: Sputcn32_0612: Thiosulfate reductase electron transport protein phsB	Shewanella sediminis HAW-EB3 Gene: Ssed_4046: Thiosulfate reductase electron transport protein phsB	Shewanella sp ANA-3 Gene: Shewana3_3618: Thiosulfate reductase electron transport protein phsB	Shewanella sp MR-4 Gene: Shewmr4_3443: Thiosulfate reductase electron transport protein phsB	Shewanella sp MR-7 Gene: Shewmr7_0508: Thiosulfate reductase electron transport protein phsB	* Shewanella sp W3-18-1 Site: position = -2483 score = 6.59521 sequence = CCCTATGTGGTTTACCACAATATC Gene: Sputw3181_3558: Thiosulfate reductase electron transport protein phsB	Shewanella woodyi ATCC 51908	Thiosulfate reductase electron transport protein phsB
phsC	Shewanella amazonensis SB2B Gene: Sama_3175: Thiosulfate reductase cytochrome B subunit	Shewanella baltica OS155 Gene: Sbal_3779: Thiosulfate reductase cytochrome B subunit	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2001: Thiosulfate reductase cytochrome B subunit	Shewanella halifaxensis HAW-EB4 Gene: Shal_3125: Thiosulfate reductase cytochrome B subunit	Shewanella loihica PV-4 Gene: Shew_0606: Thiosulfate reductase cytochrome B subunit	Shewanella oneidensis MR-1 Gene: SO4060: Thiosulfate reductase cytochrome B subunit	Shewanella pealeana ATCC 700345 Gene: Spea_3037: Thiosulfate reductase cytochrome B subunit	Shewanella piezotolerans WP3 Gene: swp_1240: Thiosulfate reductase cytochrome B subunit	Shewanella putrefaciens CN-32 Gene: Sputcn32_0613: Thiosulfate reductase cytochrome B subunit	Shewanella sediminis HAW-EB3 Gene: Ssed_4045: Thiosulfate reductase cytochrome B subunit	Shewanella sp ANA-3 Gene: Shewana3_3617: Thiosulfate reductase cytochrome B subunit	Shewanella sp MR-4 Gene: Shewmr4_3442: Thiosulfate reductase cytochrome B subunit	Shewanella sp MR-7 Gene: Shewmr7_0509: Thiosulfate reductase cytochrome B subunit	Shewanella sp W3-18-1 Gene: Sputw3181_3557: Thiosulfate reductase cytochrome B subunit	Shewanella woodyi ATCC 51908	Thiosulfate reductase cytochrome B subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhsR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --