Statistics of regulated genes

Genome	Genes	Operons
Shewanella oneidensis MR-1	3	2
Shewanella putrefaciens CN-32	3	2
Shewanella sp W3-18-1	3	2
Shewanella sp ANA-3	3	2
Shewanella sp MR-4	3	2
Shewanella sp MR-7	3	2
Shewanella baltica OS155	3	2
Shewanella denitrificans OS217	2	1
Shewanella frigidimarina NCIMB 400	3	2
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																	Function
CRON 1.
SO3494	* Shewanella oneidensis MR-1 Site: position = -273 score = 6.24162 sequence = TAAATACCGATTGGTAAAAA Gene: SO_3494: Transcriptional regulator, TetR family	* Shewanella putrefaciens CN-32 Site: position = -266 score = 5.94883 sequence = TATGTACCGACTGGTATTAA Site: position = -339 score = 5.99244 sequence = TAAATACCGACTGGTAAAAA Gene: Sputcn32_2793: Transcriptional regulator, TetR family	* Shewanella sp W3-18-1 Site: position = -266 score = 5.94883 sequence = TATGTACCGACTGGTATTAA Site: position = -339 score = 5.99244 sequence = TAAATACCGACTGGTAAAAA Gene: Sputw3181_1219: Transcriptional regulator, TetR family	* Shewanella sp ANA-3 Site: position = -213 score = 5.20216 sequence = TTTGTACCGATGAGTATTTA Site: position = -285 score = 5.99244 sequence = TAAATACCGACTGGTAAAAA Gene: Shewana3_1076: Transcriptional regulator, TetR family	* Shewanella sp MR-4 Site: position = -216 score = 5.20216 sequence = TTTGTACCGATAAGTATTTA Site: position = -289 score = 5.99244 sequence = TAAATACCGACTGGTAAAAA Gene: Shewmr4_1072: Transcriptional regulator, TetR family	* Shewanella sp MR-7 Site: position = -288 score = 6.24162 sequence = TAAATACCGATTGGTAAAAA Site: position = -215 score = 5.20216 sequence = TTTGTACCGATAAGTATTTA Gene: Shewmr7_1144: Transcriptional regulator, TetR family	* Shewanella baltica OS155 Site: position = -502 score = 6.19802 sequence = TATGTACCGATTGGTATTAA Gene: Sbal_3183: Transcriptional regulator, TetR family	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -262 score = 6.25193 sequence = TTTGTACCGATTGGTATTAA Site: position = -334 score = 6.30585 sequence = TTTATACCAATCGGTACAAA Gene: Sfri_3984: Transcriptional regulator, TetR family	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Transcriptional regulator, TetR family
CRON 2.
mexE	* Shewanella oneidensis MR-1 Site: position = 99 score = 6.24162 sequence = TTTtTACCAATCGGTATttA Gene: SO_3493: RND multidrug efflux membrane fusion protein MexE	* Shewanella putrefaciens CN-32 Site: position = -97 score = 5.99244 sequence = TTTTTACCAGTCGGTATTTA Site: position = -170 score = 5.94883 sequence = TTAATACCAGTCGGTACATA Gene: Sputcn32_2792: RND multidrug efflux membrane fusion protein MexE	* Shewanella sp W3-18-1 Site: position = -170 score = 5.94883 sequence = TTAATACCAGTCGGTACATA Site: position = -97 score = 5.99244 sequence = TTTTTACCAGTCGGTATTTA Gene: Sputw3181_1220: RND multidrug efflux membrane fusion protein MexE	* Shewanella sp ANA-3 Site: position = -166 score = 5.20216 sequence = TAAATACTCATCGGTACAAA Site: position = -94 score = 5.99244 sequence = TTTTTACCAGTCGGTATTTA Gene: Shewana3_1077: RND multidrug efflux membrane fusion protein MexE	* Shewanella sp MR-4 Site: position = -166 score = 5.20216 sequence = TAAATACTTATCGGTACAAA Site: position = -93 score = 5.99244 sequence = TTTTTACCAGTCGGTATTTA Gene: Shewmr4_1073: RND multidrug efflux membrane fusion protein MexE	* Shewanella sp MR-7 Site: position = -93 score = 6.24162 sequence = TTTTTACCAATCGGTATTTA Site: position = -166 score = 5.20216 sequence = TAAATACTTATCGGTACAAA Gene: Shewmr7_1145: RND multidrug efflux membrane fusion protein MexE	* Shewanella baltica OS155 Site: position = -72 score = 5.99244 sequence = TTTTTACCAGTCGGTATTTA Site: position = -145 score = 6.19802 sequence = TTAATACCAATCGGTACATA Gene: Sbal_3182: RND multidrug efflux membrane fusion protein MexE	* Shewanella denitrificans OS217 Site: position = -70 score = 5.23755 sequence = ATCATACCGACCGGTACAAA Site: position = -119 score = 5.80998 sequence = AAATTACCAATCGGTACAAA Gene: Sden_3079: RND multidrug efflux membrane fusion protein MexE	* Shewanella frigidimarina NCIMB 400 Site: position = -169 score = 6.25193 sequence = TTAATACCAATCGGTACAAA Site: position = -97 score = 6.30585 sequence = TTTGTACCGATTGGTATAAA Gene: Sfri_3985: RND multidrug efflux membrane fusion protein MexE	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	RND multidrug efflux membrane fusion protein MexE
mexF	Shewanella oneidensis MR-1 Gene: SO_3492: Acriflavin resistance protein	Shewanella putrefaciens CN-32 Gene: Sputcn32_2791: Acriflavin resistance protein	Shewanella sp W3-18-1 Gene: Sputw3181_1221: Acriflavin resistance protein	Shewanella sp ANA-3 Gene: Shewana3_1078: Acriflavin resistance protein	Shewanella sp MR-4 Gene: Shewmr4_1074: Acriflavin resistance protein	Shewanella sp MR-7 Gene: Shewmr7_1146: Acriflavin resistance protein	Shewanella baltica OS155 Gene: Sbal_3181: Acriflavin resistance protein	Shewanella denitrificans OS217 Gene: Sden_3080: Acriflavin resistance protein	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3986: Acriflavin resistance protein	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Acriflavin resistance protein

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