Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MlnR - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Malonate metabolism
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N
Bordetella bronchiseptica RB50 9 1
Bordetella petrii DSM 12804 10 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
mlnR
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -37
score = 6.65499
sequence = TTATTCATAATTATGAATTA

Gene: BB3362: Transcriptional regulator of malonate metabolism, GntR family
*
Bordetella petrii DSM 12804

Site:
position = -43
score = 5.4133
sequence = TTTCCTATAATTATGAATTA

Gene: Bpet3277: Transcriptional regulator of malonate metabolism, GntR family
Transcriptional regulator of malonate metabolism, GntR family
matA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB3361: Malonyl-CoA decarboxylase
 
Bordetella petrii DSM 12804

Gene: Bpet3276: Malonyl-CoA decarboxylase
Malonyl-CoA decarboxylase
BB3360
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB3360: methylmalonyl CoA decarboxylase/enoyl-CoA hydratase
 
Bordetella petrii DSM 12804

Gene: Bpet3275: methylmalonyl CoA decarboxylase/enoyl-CoA hydratase
methylmalonyl CoA decarboxylase/enoyl-CoA hydratase
matB
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB3359: Malonyl CoA synthetase
 
Bordetella petrii DSM 12804

Gene: Bpet3274: Malonyl CoA synthetase
Malonyl CoA synthetase
matP
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3273: TRAP-type malonate transport system, periplasmic component
TRAP-type malonate transport system, periplasmic component
matM
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3272: TRAP-type malonate transport system, small permease component
TRAP-type malonate transport system, small permease component
matQ
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3271: TRAP-type malonate transport system, large permease component
TRAP-type malonate transport system, large permease component
BAV2471
 
Bordetella avium 197N

Gene: BAV2471: ABC transporter substrate-binding protein
 
Bordetella bronchiseptica RB50

Gene: BB3356: ABC transporter substrate-binding protein
 
Bordetella petrii DSM 12804

Gene: Bpet3270: ABC transporter substrate-binding protein
ABC transporter substrate-binding protein
BAV2470
 
Bordetella avium 197N

Gene: BAV2470: ABC transporter, permease protein
 
Bordetella bronchiseptica RB50

Gene: BB3355: ABC transporter, permease protein
 
Bordetella petrii DSM 12804

Gene: Bpet3269: ABC transporter, permease protein
ABC transporter, permease protein
BAV2469
 
Bordetella avium 197N

Gene: BAV2469: ABC transporter, ATP-binding protein
 
Bordetella bronchiseptica RB50

Gene: BB3354: ABC transporter, ATP-binding protein
 
Bordetella petrii DSM 12804

Gene: Bpet3268: ABC transporter, ATP-binding protein
ABC transporter, ATP-binding protein
BB3358
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB3358: putative exported protein
 
Bordetella petrii DSM 12804
putative exported protein
sodC
 
Bordetella avium 197N

Gene: BAV2473: Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)
 
Bordetella bronchiseptica RB50

Gene: BB3357: Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)
 
Bordetella petrii DSM 12804

Gene: Bpet3851: Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD