Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog HmgQ - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Tyrosine degradation
Effector: 4-hydroxyphenylpyruvate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 33 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 2
Shewanella putrefaciens CN-32 3 2
Shewanella sp W3-18-1 3 2
Shewanella sp ANA-3 3 2
Shewanella sp MR-4 3 2
Shewanella sp MR-7 3 2
Shewanella baltica OS155 3 2
Shewanella denitrificans OS217 3 2
Shewanella frigidimarina NCIMB 400 3 2
Shewanella amazonensis SB2B 3 2
Shewanella loihica PV-4 3 2
Shewanella pealeana ATCC 700345 3 2
Shewanella halifaxensis HAW-EB4 3 2
Shewanella piezotolerans WP3 3 2
Shewanella sediminis HAW-EB3 2 2
Shewanella woodyi ATCC 51908 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hmgQ
*
Shewanella oneidensis MR-1

Site:
position = -79
score = 5.58978
sequence = ATCTAAAAAATAGAT

Gene: SO1965: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella putrefaciens CN-32

Site:
position = -79
score = 5.58978
sequence = ATCTAAAAAATAGAT

Gene: Sputcn32_1672: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella sp W3-18-1

Site:
position = -79
score = 5.77571
sequence = ATCTAAAAATTAGAT

Gene: Sputw3181_2353: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella sp ANA-3

Site:
position = -79
score = 5.77571
sequence = ATCTAAAAATTAGAT

Gene: Shewana3_2480: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella sp MR-4

Site:
position = -79
score = 5.77571
sequence = ATCTAAAAATTAGAT

Gene: Shewmr4_2290: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella sp MR-7

Site:
position = -79
score = 5.50086
sequence = ATCTAAAAATTTGAT

Gene: Shewmr7_2362: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella baltica OS155

Site:
position = -79
score = 5.77571
sequence = ATCTAAAAATTAGAT

Gene: Sbal_2614: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella denitrificans OS217

Site:
position = -77
score = 5.31493
sequence = ATCAAATTTATAGAT

Gene: Sden_2161: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -66
score = 5.58978
sequence = ATCTATTTTTTAGAT

Gene: Sfri_2325: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella amazonensis SB2B

Site:
position = -66
score = 5.77571
sequence = ATCTAAAAATTAGAT

Gene: Sama_1570: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella loihica PV-4

Site:
position = -46
score = 5.7954
sequence = ATCTAAATTTTAGAT

Gene: Shew_2153: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella pealeana ATCC 700345

Site:
position = -46
score = 4.97092
sequence = ATCATATTTTTAGAT

Gene: Spea_1875: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -46
score = 5.37644
sequence = ATCGAATTTTTAGAT

Gene: Shal_2408: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella piezotolerans WP3

Site:
position = -46
score = 5.58978
sequence = ATCTATTTTTTAGAT

Gene: swp_2869: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella sediminis HAW-EB3

Site:
position = -47
score = 5.39613
sequence = ATCGAAATTTTAGAT

Gene: Ssed_2686: Tyrosine degradation transcriptional regulator, LysR family
*
Shewanella woodyi ATCC 51908

Site:
position = -47
score = 4.97092
sequence = AACAAAATATTAGAT

Gene: Swoo_1933: Tyrosine degradation transcriptional regulator, LysR family
Tyrosine degradation transcriptional regulator, LysR family
 
CRON 2.
hmgA
*
Shewanella oneidensis MR-1

Site:
position = -154
score = 5.58978
sequence = ATCTATTTTTTAGAT

Gene: SO1963: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella putrefaciens CN-32

Site:
position = -128
score = 5.58978
sequence = ATCTATTTTTTAGAT

Gene: Sputcn32_1671: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella sp W3-18-1

Site:
position = -128
score = 5.77571
sequence = ATCTAATTTTTAGAT

Gene: Sputw3181_2354: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella sp ANA-3

Site:
position = -150
score = 5.77571
sequence = ATCTAATTTTTAGAT

Gene: Shewana3_2481: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella sp MR-4

Site:
position = -150
score = 5.77571
sequence = ATCTAATTTTTAGAT

Gene: Shewmr4_2291: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella sp MR-7

Site:
position = -150
score = 5.50086
sequence = ATCAAATTTTTAGAT

Gene: Shewmr7_2363: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella baltica OS155

Site:
position = -150
score = 5.77571
sequence = ATCTAATTTTTAGAT

Gene: Sbal_2615: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella denitrificans OS217

Site:
position = -184
score = 5.31493
sequence = ATCTATAAATTTGAT

Gene: Sden_2162: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -168
score = 5.58978
sequence = ATCTAAAAAATAGAT

Gene: Sfri_2326: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella amazonensis SB2B

Site:
position = -140
score = 5.77571
sequence = ATCTAATTTTTAGAT

Gene: Sama_1569: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella loihica PV-4

Site:
position = -123
score = 5.7954
sequence = ATCTAAAATTTAGAT

Gene: Shew_2154: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella pealeana ATCC 700345

Site:
position = -124
score = 4.97092
sequence = ATCTAAAAATATGAT

Gene: Spea_1874: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -42
score = 5.10931
sequence = ATCAATTAAATAGAT

Site:
position = -124
score = 5.37644
sequence = ATCTAAAAATTCGAT

Gene: Shal_2409: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Shewanella piezotolerans WP3

Site:
position = -123
score = 5.58978
sequence = ATCTAAAAAATAGAT

Gene: swp_2870: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
hpd
 
Shewanella oneidensis MR-1

Gene: SO1962: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1670: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella sp W3-18-1

Gene: Sputw3181_2355: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella sp ANA-3

Gene: Shewana3_2482: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella sp MR-4

Gene: Shewmr4_2292: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella sp MR-7

Gene: Shewmr7_2364: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella baltica OS155

Gene: Sbal_2616: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella denitrificans OS217

Gene: Sden_2163: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2327: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella amazonensis SB2B

Gene: Sama_1568: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella loihica PV-4

Gene: Shew_2155: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1873: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2410: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Shewanella piezotolerans WP3

Gene: swp_2871: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
*
Shewanella sediminis HAW-EB3

Site:
position = -190
score = 5.39613
sequence = ATCTAAAATTTCGAT

Gene: Ssed_2687: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
*
Shewanella woodyi ATCC 51908

Site:
position = -265
score = 4.97092
sequence = ATCTAATATTTTGTT

Gene: Swoo_1932: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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