Regulon of HmgQ in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_1570 |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Tyrosine degradation |
| Effector: | 4-hydroxyphenylpyruvate |
| Regulog: | HmgQ - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 3 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LysR
- By effector - 4-hydroxyphenylpyruvate
- By pathway - Tyrosine degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -66
Score: 5.8 Sequence: ATCTAAAAATTAGAT
Locus tag: Sama_1570
Name: hmgQ Funciton: Tyrosine degradation transcriptional regulator, LysR family |
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hmgQ
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Tyrosine degradation transcriptional regulator, LysR family
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Position: -140
Score: 5.8 Sequence: ATCTAATTTTTAGAT
Locus tag: Sama_1569
Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Locus tag: Sama_1568
Name: hpd Funciton: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
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hmgA
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Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
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hpd
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4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |