Profile of regulator HmgQ in Shewanellaceae
Properties
| Regulator family: |
LysR |
| Regulation mode: |
activator (repressor) |
| Biological process: |
Tyrosine degradation |
| Effector: |
4-hydroxyphenylpyruvate |
| Regulog: |
HmgQ - Shewanellaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Shewanella oneidensis MR-1
|
|
SO1965 |
hmgQ |
-79 |
5.6 |
ATCTAAAAAATAGAT |
|
SO1963 |
hmgA |
-154 |
5.6 |
ATCTATTTTTTAGAT |
|
Shewanella putrefaciens CN-32
|
|
Sputcn32_1671 |
hmgA |
-128 |
5.6 |
ATCTATTTTTTAGAT |
|
Sputcn32_1672 |
hmgQ |
-79 |
5.6 |
ATCTAAAAAATAGAT |
|
Shewanella sp W3-18-1
|
|
Sputw3181_2354 |
hmgA |
-128 |
5.8 |
ATCTAATTTTTAGAT |
|
Sputw3181_2353 |
hmgQ |
-79 |
5.8 |
ATCTAAAAATTAGAT |
|
Shewanella sp ANA-3
|
|
Shewana3_2480 |
hmgQ |
-79 |
5.8 |
ATCTAAAAATTAGAT |
|
Shewana3_2481 |
hmgA |
-150 |
5.8 |
ATCTAATTTTTAGAT |
|
Shewanella sp MR-4
|
|
Shewmr4_2291 |
hmgA |
-150 |
5.8 |
ATCTAATTTTTAGAT |
|
Shewmr4_2290 |
hmgQ |
-79 |
5.8 |
ATCTAAAAATTAGAT |
|
Shewanella sp MR-7
|
|
Shewmr7_2363 |
hmgA |
-150 |
5.5 |
ATCAAATTTTTAGAT |
|
Shewmr7_2362 |
hmgQ |
-79 |
5.5 |
ATCTAAAAATTTGAT |
|
Shewanella baltica OS155
|
|
Sbal_2615 |
hmgA |
-150 |
5.8 |
ATCTAATTTTTAGAT |
|
Sbal_2614 |
hmgQ |
-79 |
5.8 |
ATCTAAAAATTAGAT |
|
Shewanella denitrificans OS217
|
|
Sden_2162 |
hmgA |
-184 |
5.3 |
ATCTATAAATTTGAT |
|
Sden_2161 |
hmgQ |
-77 |
5.3 |
ATCAAATTTATAGAT |
|
Shewanella frigidimarina NCIMB 400
|
|
Sfri_2326 |
hmgA |
-168 |
5.6 |
ATCTAAAAAATAGAT |
|
Sfri_2325 |
hmgQ |
-66 |
5.6 |
ATCTATTTTTTAGAT |
|
Shewanella amazonensis SB2B
|
|
Sama_1570 |
hmgQ |
-66 |
5.8 |
ATCTAAAAATTAGAT |
|
Sama_1569 |
hmgA |
-140 |
5.8 |
ATCTAATTTTTAGAT |
|
Shewanella loihica PV-4
|
|
Shew_2154 |
hmgA |
-123 |
5.8 |
ATCTAAAATTTAGAT |
|
Shew_2153 |
hmgQ |
-46 |
5.8 |
ATCTAAATTTTAGAT |
|
Shewanella pealeana ATCC 700345
|
|
Spea_1874 |
hmgA |
-124 |
5 |
ATCTAAAAATATGAT |
|
Spea_1875 |
hmgQ |
-46 |
5 |
ATCATATTTTTAGAT |
|
Shewanella halifaxensis HAW-EB4
|
|
Shal_2409 |
hmgA |
-42 |
5.1 |
ATCAATTAAATAGAT |
|
Shal_2409 |
hmgA |
-124 |
5.4 |
ATCTAAAAATTCGAT |
|
Shal_2408 |
hmgQ |
-46 |
5.4 |
ATCGAATTTTTAGAT |
|
Shewanella piezotolerans WP3
|
|
swp_2870 |
hmgA |
-123 |
5.6 |
ATCTAAAAAATAGAT |
|
swp_2869 |
hmgQ |
-46 |
5.6 |
ATCTATTTTTTAGAT |
|
Shewanella sediminis HAW-EB3
|
|
Ssed_2687 |
hpd |
-190 |
5.4 |
ATCTAAAATTTCGAT |
|
Ssed_2686 |
hmgQ |
-47 |
5.4 |
ATCGAAATTTTAGAT |
|
Shewanella woodyi ATCC 51908
|
|
Swoo_1932 |
hpd |
-265 |
5 |
ATCTAATATTTTGTT |
|
Swoo_1933 |
hmgQ |
-47 |
5 |
AACAAAATATTAGAT |
Export
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