Regulog YhcF - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Multidrug resistance; Multidrug efflux
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - GntR/Others
By pathway - Multidrug resistance
By pathway - Multidrug efflux

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824	6	2
Clostridium beijerincki NCIMB 8052	3	1
Clostridium botulinum A str. ATCC 3502	3	1
Clostridium butyricum 5521	3	1
Clostridium kluyveri DSM 555	4	2
Clostridium novyi NT	3	1
Clostridium perfringens ATCC 13124	4	1
Clostridium tetani E88

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
yhcG	Clostridium acetobutylicum ATCC 824 Gene: CAC0266: ABC-type multidrug transport system, ATPase component	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0790: ABC-type multidrug transport system, ATPase component	Clostridium botulinum A str. ATCC 3502 Gene: CBO0559: ABC-type multidrug transport system, ATPase component	Clostridium butyricum 5521 Gene: CBY_3924: ABC-type multidrug transport system, ATPase component	Clostridium kluyveri DSM 555 Gene: CKL_2362: ABC-type multidrug transport system, ATPase component	Clostridium novyi NT Gene: NT01CX_0787: ABC-type multidrug transport system, ATPase component	* Clostridium perfringens ATCC 13124 Site: position = -62 score = 6.87926 sequence = GTGTATTAATGAAGTAATACAT Site: position = -93 score = 6.66119 sequence = GTGTATTAGTGGTATAATACAC Gene: CPF_2288: ABC-type multidrug transport system, ATPase component	Clostridium tetani E88 Gene: CTC01987: ABC-type multidrug transport system, ATPase component	ABC-type multidrug transport system, ATPase component
yhcI	* Clostridium acetobutylicum ATCC 824 Site: position = -65 score = 5.69358 sequence = GTGTATTATATACATAGTACAG Gene: CAC0264: ABC-type multidrug transport system, permease component	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0789: ABC-type multidrug transport system, permease component	Clostridium botulinum A str. ATCC 3502 Gene: CBO0560: ABC-type multidrug transport system, permease component	Clostridium butyricum 5521 Gene: CBY_3925: ABC-type multidrug transport system, permease component	Clostridium kluyveri DSM 555 Gene: CKL_2361: ABC-type multidrug transport system, permease component	Clostridium novyi NT Gene: NT01CX_0786: ABC-type multidrug transport system, permease component	Clostridium perfringens ATCC 13124 Gene: CPF_2287: ABC-type multidrug transport system, permease component	Clostridium tetani E88	ABC-type multidrug transport system, permease component
CPF_2286	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124 Gene: CPF_2286: hypothetical protein	Clostridium tetani E88	hypothetical protein
yhcF	Clostridium acetobutylicum ATCC 824 Gene: CAC0265: Transcriptional regulator, GntR family	* Clostridium beijerincki NCIMB 8052 Site: position = -57 score = 4.9821 sequence = TTGTATTAACAACTTAGTACAA Gene: Cbei_0791: Transcriptional regulator, GntR family	* Clostridium botulinum A str. ATCC 3502 Site: position = -43 score = 5.24301 sequence = GTGTACTATTTAGATAGTACAG Gene: CBO0558A: Transcriptional regulator, GntR family	* Clostridium butyricum 5521 Site: position = -57 score = 5.13457 sequence = TTGTATTATAGACTTAGTACAA Gene: CBY_3923: Transcriptional regulator, GntR family	* Clostridium kluyveri DSM 555 Site: position = -44 score = 5.30675 sequence = GTGTATTATTATAATAGAACAC Gene: CKL_2363: Transcriptional regulator, GntR family	* Clostridium novyi NT Site: position = -64 score = 6.75001 sequence = GTGTATTAATATATTAATACAC Gene: NT01CX_0788: Transcriptional regulator, GntR family	Clostridium perfringens ATCC 13124 Gene: CPF_2285: Transcriptional regulator, GntR family	Clostridium tetani E88	Transcriptional regulator, GntR family

CRON 2.
CAC3561	* Clostridium acetobutylicum ATCC 824 Site: position = -174 score = 6.15532 sequence = GTGTACTATTTATGTAATACAC Gene: CAC3561: ABC-type transporter, permease component	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	ABC-type transporter, permease component
CAC1998	Clostridium acetobutylicum ATCC 824 Gene: CAC3560: ABC-type transporter, ATPase component	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	ABC-type transport system, ATPase component
CAC3559	Clostridium acetobutylicum ATCC 824 Gene: CAC3559: Membrane permease, predicted cation efflux pumps	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Membrane permease, predicted cation efflux pumps

CRON 3.
CAC3585	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	* Clostridium kluyveri DSM 555 Site: position = -69 score = 5.85045 sequence = GTGTATTATAACTATAGTACAC Gene: CKL_1661: ABC-type multidrug transport system, ATPase component	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	ABC-type multidrug transport system, ATPase component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YhcF - Clostridia-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --