Regulog MetJ - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | MetJ |
| Regulation mode: | repressor |
| Biological process: | Methionine metabolism; Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - MetJ
- By TF family - MetJ
- By effector - S-adenosylmethionine
- By pathway - Methionine metabolism
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 9 | 7 |
| Alteromonas macleodii 'Deep ecotype' | 10 | 6 |
| Glaciecola sp. HTCC2999 | 10 | 6 |
| Colwellia psychrerythraea 34H | 14 | 9 |
| Alteromonadales bacterium TW-7 | 13 | 8 |
| Pseudoalteromonas haloplanktis TAC125 | 14 | 9 |
| Pseudoalteromonas tunicata D2 | 19 | 12 |
| Idiomarina baltica OS145 | 7 | 6 |
| Idiomarina loihiensis L2TR | 8 | 7 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| metR |
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Colwellia psychrerythraea 34H Site: position = -83 score = 6.36125 sequence = AGACGTTT-(0)-AAATGGTT Site: position = -91 score = 7.33184 sequence = GGACGTCT-(0)-AGACGTTT Gene: CPS_4359: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Alteromonadales bacterium TW-7 Site: position = -81 score = 6.08992 sequence = AGACGTTG-(0)-AAACGTTT Site: position = -89 score = 6.77558 sequence = AGACGTCT-(0)-AGACGTTG Gene: ATW7_06703: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -89 score = 6.1164 sequence = AGCCTTCT-(0)-AGACGTTG Site: position = -81 score = 6.08992 sequence = AGACGTTG-(0)-AAACGTTT Gene: PSHAa1181: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Pseudoalteromonas tunicata D2 Site: position = -375 score = 6.05447 sequence = GGATGTTT-(0)-AGATGGCT Gene: PTD2_22482: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
| CRON 2. | ||||||||||
| metB |
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Colwellia psychrerythraea 34H Site: position = -169 score = 6.37284 sequence = AGAAGTTT-(0)-AGAAGTCT Site: position = -121 score = 5.98668 sequence = AGAGTTAT-(0)-AGACGTCC Site: position = -113 score = 7.19799 sequence = AGACGTCC-(0)-AAACATCT Gene: CPS_0455: Cystathionine gamma-synthase (EC 2.5.1.48) |
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Alteromonadales bacterium TW-7 Site: position = -36 score = 7.56226 sequence = AGACGTCT-(0)-AAACATCC Gene: ATW7_17928: Cystathionine gamma-synthase (EC 2.5.1.48) |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -36 score = 7.86975 sequence = AGACGTCT-(0)-AAACATCT Gene: PSHAa2723: Cystathionine gamma-synthase (EC 2.5.1.48) |
*
Pseudoalteromonas tunicata D2 Site: position = -91 score = 6.05606 sequence = AGCTATTT-(0)-AGACGTAT Site: position = -44 score = 6.54815 sequence = AACCTTTT-(0)-AGACGTCT Site: position = -83 score = 6.49919 sequence = AGACGTAT-(0)-AAATGTTT Site: position = -36 score = 7.86975 sequence = AGACGTCT-(0)-AAACATCT Gene: PTD2_16511: Cystathionine gamma-synthase (EC 2.5.1.48) |
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Cystathionine gamma-synthase (EC 2.5.1.48) |
| metL |
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Gene: CPS_0456: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: ATW7_17933: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: PSHAa2722: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: PTD2_16506: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
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Idiomarina baltica OS145 Site: position = -97 score = 6.62678 sequence = ATCCGTCT-(0)-AGATGGCT Gene: OS145_09128: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Idiomarina loihiensis L2TR Site: position = -97 score = 6.62678 sequence = ATCCGTCT-(0)-AGATGGCT Gene: IL2466: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
| CRON 3. | ||||||||||
| metF-II |
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Colwellia psychrerythraea 34H Site: position = -38 score = 7.6773 sequence = AGCCATCT-(0)-AAACGTCT Gene: CPS_0276: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20) |
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Alteromonadales bacterium TW-7 Site: position = -65 score = 6.57736 sequence = ATCTATCT-(0)-AGACGTCT Site: position = -57 score = 7.30654 sequence = AGACGTCT-(0)-AAATGGCT Gene: ATW7_04247: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20) |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -68 score = 6.47407 sequence = AGCTATCT-(0)-AGCCATCT Site: position = -60 score = 6.92022 sequence = AGCCATCT-(0)-AAATGGCT Gene: PSHAa0642: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20) |
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Pseudoalteromonas tunicata D2 Site: position = -58 score = 7.30654 sequence = AGACGTCT-(0)-AAATGGCT Gene: PTD2_08889: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20) |
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5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20) |
| CRON 4. | ||||||||||
| metK |
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Pseudoalteromonas atlantica T6c Site: position = -100 score = 7.13131 sequence = AGCCGTTT-(0)-GGACGTCT Gene: Patl_3331: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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Alteromonas macleodii 'Deep ecotype' Site: position = -95 score = 7.40748 sequence = AGACTTTT-(0)-AGACGTCT Gene: MADE_03161: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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Glaciecola sp. HTCC2999 Site: position = -115 score = 6.94813 sequence = AGACGTCT-(0)-AGATGGTT Site: position = -123 score = 7.50002 sequence = AGACGTAT-(0)-AGACGTCT Gene: GHTCC_010100002529: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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Colwellia psychrerythraea 34H Site: position = -100 score = 7.29791 sequence = AGACGTTT-(0)-AGCCGTCT Gene: CPS_1256: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: ATW7_04382: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: PSHAa0670: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: PTD2_13384: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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Idiomarina baltica OS145 Site: position = -99 score = 6.93368 sequence = AGACTTTT-(0)-GGACGTCT Gene: OS145_07801: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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Idiomarina loihiensis L2TR Site: position = -99 score = 6.72663 sequence = GGACTTTT-(0)-AGACGTCC Gene: IL2215: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| CRON 5. | ||||||||||
| serA |
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Pseudoalteromonas atlantica T6c Site: position = -45 score = 7.28817 sequence = AGACGTCC-(0)-AGATGTCT Gene: Patl_1156: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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Alteromonas macleodii 'Deep ecotype' Site: position = -93 score = 7.95992 sequence = AGACGTCT-(0)-AGATGTCT Gene: MADE_03208: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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Glaciecola sp. HTCC2999 Site: position = -46 score = 7.95992 sequence = AGACGTCT-(0)-AGATGTCT Site: position = -54 score = 6.1038 sequence = AAGCATTT-(0)-AGACGTCT Gene: GHTCC_010100002789: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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Colwellia psychrerythraea 34H Site: position = -64 score = 6.70484 sequence = AGATATCT-(0)-AGCCATCT Gene: CPS_1544: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: ATW7_04362: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: PSHAa0666: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: PTD2_12904: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: OS145_04268: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: IL2104: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
| CRON 6. | ||||||||||
| metA |
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Pseudoalteromonas atlantica T6c Site: position = -88 score = 6.2221 sequence = TTACGTTT-(0)-AGACGTCT Site: position = -80 score = 6.571 sequence = AGACGTCT-(0)-AGACGTAA Gene: Patl_3021: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Alteromonas macleodii 'Deep ecotype' Site: position = -81 score = 6.571 sequence = AGACGTCT-(0)-AGACGTAA Site: position = -89 score = 7.20732 sequence = AAACGTTT-(0)-AGACGTCT Gene: MADE_02861: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Glaciecola sp. HTCC2999 Site: position = -78 score = 7.50064 sequence = AGACGTCT-(0)-AGACGTAT Site: position = -86 score = 7.83589 sequence = AGACGTTT-(0)-AGACGTCT Gene: GHTCC_010100000045: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Colwellia psychrerythraea 34H Site: position = -92 score = 7.18127 sequence = AGACGTCT-(0)-ATACGTTT Gene: CPS_1100: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Alteromonadales bacterium TW-7 Site: position = -82 score = 7.36984 sequence = AGACATCT-(0)-ATACATCT Gene: ATW7_10333: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -82 score = 6.83186 sequence = AGACATCT-(0)-ATCCATCT Site: position = -90 score = 6.46214 sequence = GGATATTT-(0)-AGACATCT Gene: PSHAa2224: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Pseudoalteromonas tunicata D2 Site: position = -83 score = 7.7142 sequence = AGACATCT-(0)-AAACATCT Gene: PTD2_08609: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Homoserine O-succinyltransferase (EC 2.3.1.46) |
| metH2 |
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Gene: MADE_02860: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: GHTCC_010100000040: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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Gene: ATW7_10328: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: PSHAa2223: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: PTD2_08614: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| metH |
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Gene: MADE_02859: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: GHTCC_010100000035: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: CPS_1101: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: ATW7_10323: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: PSHAa2222: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: PTD2_08619: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| CRON 7. | ||||||||||
| metJ |
*
Pseudoalteromonas atlantica T6c Site: position = -126 score = 7.46252 sequence = GGACGTTT-(0)-AGACGTCT Site: position = -90 score = 6.16276 sequence = AGCCGTCA-(0)-AGATGTTT Gene: Patl_3956: S-adenosylmethionine-responsive transcriptional repressor MetJ |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -132 score = 7.83589 sequence = AGACGTTT-(0)-AGACGTCT Site: position = -96 score = 5.99121 sequence = AGACGTCA-(0)-AGAGGTTT Gene: MADE_03523: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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Glaciecola sp. HTCC2999 Site: position = -122 score = 7.83589 sequence = AGACGTTT-(0)-AGACGTCT Gene: GHTCC_010100003244: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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Colwellia psychrerythraea 34H Site: position = -143 score = 6.12205 sequence = GGACGTCT-(0)-ATAACTCT Site: position = -95 score = 6.75633 sequence = AGACTTCT-(0)-AAACTTCT Site: position = -151 score = 6.71112 sequence = AGATGTTT-(0)-GGACGTCT Gene: CPS_0454: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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Alteromonadales bacterium TW-7 Site: position = -140 score = 5.65239 sequence = AGATGTCA-(0)-AAACATTT Site: position = -179 score = 6.81155 sequence = GGATGTTT-(0)-AGACGTCT Gene: ATW7_17923: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -179 score = 7.18492 sequence = AGATGTTT-(0)-AGACGTCT Site: position = -124 score = 5.92899 sequence = AAACACCT-(0)-AGCCATCT Gene: PSHAa2724: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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Pseudoalteromonas tunicata D2 Site: position = -224 score = 7.18492 sequence = AGATGTTT-(0)-AGACGTCT Site: position = -177 score = 6.52784 sequence = AAACATTT-(0)-ATACGTCT Site: position = -169 score = 6.48411 sequence = ATACGTCT-(0)-AAATAGCT Site: position = -216 score = 6.36624 sequence = AGACGTCT-(0)-AAAAGGTT Gene: PTD2_16516: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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Idiomarina baltica OS145 Site: position = -93 score = 6.64052 sequence = AGCCATCT-(0)-AGACGGAT Gene: OS145_09123: S-adenosylmethionine-responsive transcriptional repressor MetJ |
*
Idiomarina loihiensis L2TR Site: position = -93 score = 6.64052 sequence = AGCCATCT-(0)-AGACGGAT Gene: IL2465: S-adenosylmethionine-responsive transcriptional repressor MetJ |
S-adenosylmethionine-responsive transcriptional repressor MetJ |
| CRON 8. | ||||||||||
| metT |
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Pseudoalteromonas atlantica T6c Site: position = -27 score = 7.75613 sequence = AGACGTCT-(0)-AAACGTCC Gene: Patl_1376: Methionine transporter MetT, NhaC antiporter family |
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Colwellia psychrerythraea 34H Site: position = -79 score = 7.48343 sequence = AGCCATCT-(0)-AAACATCT Site: position = -87 score = 6.00051 sequence = AGTCATTT-(0)-AGCCATCT Gene: CPS_3465: Methionine transporter MetT, NhaC antiporter family |
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Alteromonadales bacterium TW-7 Site: position = -156 score = 5.68583 sequence = ATACATTT-(0)-AAACTTCC Site: position = -164 score = 6.60109 sequence = AGCCATCT-(0)-ATACATTT Gene: ATW7_06968: Methionine transporter MetT, NhaC antiporter family |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -148 score = 5.99332 sequence = ATACATTT-(0)-AAACTTCT Site: position = -156 score = 6.75663 sequence = AGCCGTCT-(0)-ATACATTT Gene: PSHAa1226: Methionine transporter MetT, NhaC antiporter family |
*
Pseudoalteromonas tunicata D2 Site: position = -125 score = 6.2936 sequence = AGCCATCT-(0)-ATACATTC Site: position = -133 score = 6.72724 sequence = AAACATCT-(0)-AGCCATCT Gene: PTD2_10704: Methionine transporter MetT, NhaC antiporter family |
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Idiomarina baltica OS145 Site: position = -50 score = 6.71242 sequence = AAACTTCT-(0)-GGACGTCT Site: position = -58 score = 5.40429 sequence = AGCTATAT-(0)-AAACTTCT Gene: OS145_08567: Methionine transporter MetT, NhaC antiporter family |
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Idiomarina loihiensis L2TR Site: position = -40 score = 6.40494 sequence = AAACTTCT-(0)-GGACGTCC Site: position = -48 score = 5.55983 sequence = AGCTGTAT-(0)-AAACTTCT Gene: IL2378: Methionine transporter MetT, NhaC antiporter family |
Methionine transporter MetT, NhaC antiporter family |
| CRON 9. | ||||||||||
| metF |
*
Pseudoalteromonas atlantica T6c Site: position = -36 score = 7.75613 sequence = AGACGTCT-(0)-AAACGTCC Site: position = -80 score = 6.6431 sequence = AGACTGCT-(0)-AAACATCT Gene: Patl_3955: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -45 score = 8.06362 sequence = AGACGTCT-(0)-AAACGTCT Site: position = -73 score = 6.32155 sequence = TGACGTCT-(0)-AGACATAT Gene: MADE_03524: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Glaciecola sp. HTCC2999 Site: position = -46 score = 8.06362 sequence = AGACGTCT-(0)-AAACGTCT Gene: GHTCC_010100003239: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| CRON 10. | ||||||||||
| COG0235 |
Gene: Patl_1685: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
Gene: MADE_01738: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
Gene: GHTCC_010100005477: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
Gene: CPS_1172: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
*
Alteromonadales bacterium TW-7 Site: position = -54 score = 7.44134 sequence = AGACTTCT-(0)-AAACATCT Gene: ATW7_14626: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -54 score = 7.44134 sequence = AGACTTCT-(0)-AAACATCT Gene: PSHAa0286: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
*
Pseudoalteromonas tunicata D2 Site: position = -85 score = 6.29114 sequence = AGACTTCT-(0)-ACACTTCT Gene: PTD2_06859: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
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Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
| COG4948 |
Gene: Patl_1686: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
Gene: MADE_01739: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
Gene: GHTCC_010100005472: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
Gene: CPS_1173: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
Gene: ATW7_14621: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
Gene: PSHAa0287: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
Gene: PTD2_06864: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
| CRON 11. | ||||||||||
| thrA |
*
Pseudoalteromonas atlantica T6c Site: position = -239 score = 6.31581 sequence = AGACGTCT-(0)-ATACGGCA Site: position = -247 score = 6.35926 sequence = TGACATAT-(0)-AGACGTCT Site: position = -262 score = 7.23141 sequence = AGACGTCT-(0)-AGACGGTT Gene: Patl_3580: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -242 score = 6.31581 sequence = AGACGTCT-(0)-ATACGGCA Site: position = -250 score = 6.0864 sequence = TGACTTAT-(0)-AGACGTCT Gene: MADE_03328: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Glaciecola sp. HTCC2999 Site: position = -188 score = 6.69512 sequence = TGACATTT-(0)-AGACGTCT Site: position = -180 score = 6.31581 sequence = AGACGTCT-(0)-ATACGGCA Gene: GHTCC_010100002414: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: CPS_4291: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: ATW7_11055: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: PSHAa2379: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: PTD2_12584: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
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Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
| thrB |
Gene: Patl_3579: Homoserine kinase (EC 2.7.1.39) |
Gene: MADE_03327: Homoserine kinase (EC 2.7.1.39) |
Gene: GHTCC_010100002419: Homoserine kinase (EC 2.7.1.39) |
Gene: CPS_4290: Homoserine kinase (EC 2.7.1.39) |
Gene: ATW7_11050: Homoserine kinase (EC 2.7.1.39) |
Gene: PSHAa2378: Homoserine kinase (EC 2.7.1.39) |
Gene: PTD2_12579: Homoserine kinase (EC 2.7.1.39) |
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Homoserine kinase (EC 2.7.1.39) |
| thrC |
Gene: Patl_3578: Threonine synthase (EC 4.2.3.1) |
Gene: MADE_03326: Threonine synthase (EC 4.2.3.1) |
Gene: GHTCC_010100002424: Threonine synthase (EC 4.2.3.1) |
Gene: CPS_4289: Threonine synthase (EC 4.2.3.1) |
Gene: ATW7_11045: Threonine synthase (EC 4.2.3.1) |
Gene: PSHAa2377: Threonine synthase (EC 4.2.3.1) |
Gene: PTD2_12574: Threonine synthase (EC 4.2.3.1) |
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Threonine synthase (EC 4.2.3.1) |
| CRON 12. | ||||||||||
| metX |
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*
Idiomarina baltica OS145 Site: position = -77 score = 7.49638 sequence = GGACGTCT-(0)-AAACATCT Gene: OS145_04750: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Idiomarina loihiensis L2TR Site: position = -67 score = 5.6938 sequence = AAATGTCT-(0)-TGACGTCC Site: position = -75 score = 7.40697 sequence = GGACGTCT-(0)-AAATGTCT Gene: IL2013: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Homoserine O-acetyltransferase (EC 2.3.1.31) |
| metY |
Gene: Patl_3406: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
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Gene: GHTCC_010100007942: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
Gene: CPS_2546: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
Gene: ATW7_00225: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
Gene: PSHAb0477: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
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Gene: OS145_04755: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
Gene: IL2014: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
| CRON 13. | ||||||||||
| PF08908 |
Gene: Patl_0920: Protein of unknown function DUF1852 |
Gene: MADE_01037: Protein of unknown function DUF1852 |
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Gene: CPS_1152: Protein of unknown function DUF1852 |
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Alteromonadales bacterium TW-7 Site: position = -245 score = 7.31019 sequence = AGAAATCT-(0)-AGACGTCT Gene: ATW7_00705: Protein of unknown function DUF1852 |
Gene: PSHAa1471: Protein of unknown function DUF1852 |
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Pseudoalteromonas tunicata D2 Site: position = -228 score = 6.618 sequence = AGACATCT-(0)-AGATTTCC Gene: PTD2_14897: Protein of unknown function DUF1852 |
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Protein of unknown function DUF1852 |
| metE2 |
Gene: Patl_0921: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
Gene: MADE_01036: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
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Gene: CPS_1151: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
Gene: ATW7_00710: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
Gene: PSHAa1470: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
Gene: PTD2_14892: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
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Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
| CRON 14. | ||||||||||
| msrA |
Gene: Patl_4063: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: MADE_03638: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: GHTCC_010100007352: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: CPS_4817: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
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Idiomarina baltica OS145 Site: position = -32 score = 6.53336 sequence = AGCCTTAT-(0)-AGACGTCC Gene: OS145_04880: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
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Idiomarina loihiensis L2TR Site: position = -39 score = 7.11371 sequence = AGCCATAT-(0)-AGACGTCT Gene: IL2039: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
| CRON 15. | ||||||||||
| mtnB |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -52 score = 6.52045 sequence = AGAAGTTT-(0)-AGCCGTCT Gene: PSHAa2922: Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) |
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Pseudoalteromonas tunicata D2 Site: position = -35 score = 6.11721 sequence = AGATGTAT-(0)-AGCCATCT Gene: PTD2_09374: Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) |
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Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) |
| mtnC |
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Gene: PTD2_09379: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77) |
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2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77) |
| mtnD |
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Gene: PTD2_09384: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) |
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1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) |
| CRON 16. | ||||||||||
| btuB2 |
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Idiomarina loihiensis L2TR Site: position = -42 score = 7.58981 sequence = AGACGTCT-(0)-AAACGGCT Site: position = -50 score = 7.60512 sequence = AGCCGTTT-(0)-AGACGTCT Gene: IL2488: TonB-dependent outer membrane transporter for vitamin B12 |
TonB-dependent outer membrane transporter for vitamin B12 |
| CRON 17. | ||||||||||
| btuD |
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Colwellia psychrerythraea 34H Site: position = -217 score = 7.48343 sequence = AGCCATCT-(0)-AAACATCT Gene: CPS_1166: Vitamin B12 ABC transporter, ATPase component BtuD |
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Vitamin B12 ABC transporter, ATPase component BtuD |
| btuC |
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Gene: CPS_1165: Vitamin B12 ABC transporter, permease component BtuC |
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Vitamin B12 ABC transporter, permease component BtuC |
| pduO |
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Gene: CPS_1164: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
| btuF |
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Gene: CPS_1163: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Vitamin B12 ABC transporter, B12-binding component BtuF |
| CRON 18. | ||||||||||
| metE |
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Pseudoalteromonas tunicata D2 Site: position = -36 score = 7.17595 sequence = AGCCATCT-(0)-AAACATCC Gene: PTD2_22477: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 19. | ||||||||||
| mtnK |
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Pseudoalteromonas tunicata D2 Site: position = -60 score = 5.84047 sequence = GGACATCT-(0)-AAACACTT Site: position = -68 score = 6.79806 sequence = AGAAGTCT-(0)-GGACATCT Gene: PTD2_09409: 5-methylthioribose kinase (EC 2.7.1.100) |
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5-methylthioribose kinase (EC 2.7.1.100) |
| CRON 20. | ||||||||||
| PSHAa2276 |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -17 score = 6.08938 sequence = GGCTATAT-(0)-AGACGTCT Gene: PSHAa2276: putative orphan protein |
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putative orphan protein |
| btuB |
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Gene: CPS_1162: TonB-dependent outer membrane transporter for vitamin B12 |
Gene: ATW7_10608: TonB-dependent outer membrane transporter for vitamin B12 |
Gene: PSHAa2275: TonB-dependent outer membrane transporter for vitamin B12 |
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Pseudoalteromonas tunicata D2 Site: position = -313 score = 7.12678 sequence = AGACATCT-(0)-GAACGTCC Gene: PTD2_14279: TonB-dependent outer membrane transporter for vitamin B12 |
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TonB-dependent outer membrane transporter for vitamin B12 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |