Regulog Mll1683 - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Sugar utilization |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - LacI
- By pathway - Sugar utilization
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Azorhizobium caulinodans ORS 571 | ||
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | 9 | 3 |
| Bradyrhizobium sp. BTAi1 | 9 | 3 |
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | 4 | 1 |
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | 5 | 2 |
| Rhizobium leguminosarum bv. viciae 3841 | 5 | 2 |
| Rhizobium sp. NGR234 | 4 | 1 |
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| COG0129 |
Gene: Atu3219: L-arabonate dehydratase |
Gene: AZC_3752: L-arabonate dehydratase |
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Bradyrhizobium japonicum USDA 110 Site: position = -153 score = 5.56744 sequence = AAATGGTAGCGTTACCAAGT Gene: bll3915: L-arabonate dehydratase |
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Bradyrhizobium sp. BTAi1 Site: position = -188 score = 5.81013 sequence = AAATGGTAGCGCAACCAAAA Gene: BBta_3551: L-arabonate dehydratase |
Gene: BMEII0356: L-arabonate dehydratase |
Gene: mlr5404: L-arabonate dehydratase |
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Gene: RPA3472: L-arabonate dehydratase |
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Gene: Xaut_1998: L-arabonate dehydratase |
L-arabonate dehydratase |
| COG4221 |
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Gene: bll3914: 2-keto-3-deoxy-L-fuconate dehydrogenase |
Gene: BBta_3550: 2-keto-3-deoxy-L-fuconate dehydrogenase |
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Gene: RPA3473: 2-keto-3-deoxy-L-fuconate dehydrogenase |
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2-keto-3-deoxy-L-fuconate dehydrogenase |
| COG1028 |
Gene: Atu3813: 2-keto-3-deoxy-L-fuconate dehydrogenase |
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Gene: bll3913: 2-keto-3-deoxy-L-fuconate dehydrogenase |
Gene: BBta_3549: 2-keto-3-deoxy-L-fuconate dehydrogenase |
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Gene: RL2674: 2-keto-3-deoxy-L-fuconate dehydrogenase |
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Gene: RPA3474: 2-keto-3-deoxy-L-fuconate dehydrogenase |
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Gene: Xaut_1907: 2-keto-3-deoxy-L-fuconate dehydrogenase |
2-keto-3-deoxy-L-fuconate dehydrogenase |
| CRON 2. | ||||||||||||||||
| mll1682 |
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Mesorhizobium loti MAFF303099 Site: position = -313 score = 5.92501 sequence = CTATGGTAGCGCTACCATTT Gene: mll1682: sugar ABC transporter, substrate-binding protein |
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Rhizobium etli CFN 42 Site: position = -131 score = 4.84467 sequence = GTTTGACTGCGCTGTCAACT Site: position = -154 score = 5.14485 sequence = AGTTGATAGCGCTAGCAAAT Gene: RHE_CH01787: sugar ABC transporter, substrate-binding protein |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -131 score = 5.15276 sequence = ATTTGACAGCGCTGTCAACT Site: position = -154 score = 4.68399 sequence = AGTTGACAGCGCTAGCAGAT Gene: RL1996: sugar ABC transporter, substrate-binding protein |
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Rhizobium sp. NGR234 Site: position = -262 score = 6.00208 sequence = TATTGGTAGCGCTACCATTT Gene: NGR_b21720: sugar ABC transporter, substrate-binding protein |
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sugar ABC transporter, substrate-binding protein |
| mll1680 |
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Gene: mll1680: sugar ABC transporter, ATP-binding protein |
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Gene: RHE_CH01788: sugar ABC transporter, ATP-binding protein |
Gene: RL1997: sugar ABC transporter, ATP-binding protein |
Gene: NGR_b21710: sugar ABC transporter, ATP-binding protein |
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sugar ABC transporter, ATP-binding protein |
| mll1679 |
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Gene: mll1679: sugar ABC transporter, permease protein |
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Gene: RHE_CH01789: sugar ABC transporter, permease protein |
Gene: RL1998: sugar ABC transporter, permease protein |
Gene: NGR_b21700: sugar ABC transporter, permease protein |
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sugar ABC transporter, permease protein |
| mll1678 |
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Gene: mll1678: sugar ABC transporter, permease protein |
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Gene: RHE_CH01790: sugar ABC transporter, permease protein |
Gene: RL1999: sugar ABC transporter, permease protein |
Gene: NGR_b21690: sugar ABC transporter, permease protein |
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sugar ABC transporter, permease protein |
| CRON 3. | ||||||||||||||||
| mll1683 |
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Bradyrhizobium japonicum USDA 110 Site: position = -37 score = 4.79014 sequence = TGCTGGTAGCGCTGTCAACG Gene: bll3916: Transcriptional regulator, LacI family |
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Bradyrhizobium sp. BTAi1 Site: position = -58 score = 5.40426 sequence = ACGTGATAGCGCTGTCAATA Gene: BBta_3552: Transcriptional regulator, LacI family |
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Gene: mll1683: Transcriptional regulator, LacI family |
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Rhizobium etli CFN 42 Site: position = -84 score = 5.14485 sequence = ATTTGCTAGCGCTATCAACT Site: position = -107 score = 4.84467 sequence = AGTTGACAGCGCAGTCAAAC Gene: RHE_CH01786: Transcriptional regulator, LacI family |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -117 score = 5.15276 sequence = AGTTGACAGCGCTGTCAAAT Site: position = -94 score = 4.68399 sequence = ATCTGCTAGCGCTGTCAACT Gene: RL1995: Transcriptional regulator, LacI family |
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Transcriptional regulator, LacI family |
| CRON 4. | ||||||||||||||||
| blr3917 |
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Gene: AZC_4208: probable sugar ABC transporter, ATP-binding protein |
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Bradyrhizobium japonicum USDA 110 Site: position = -162 score = 4.79014 sequence = CGTTGACAGCGCTACCAGCA Gene: blr3917: probable sugar ABC transporter, ATP-binding protein |
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Bradyrhizobium sp. BTAi1 Site: position = -233 score = 5.40426 sequence = TATTGACAGCGCTATCACGT Gene: BBta_3553: probable sugar ABC transporter, ATP-binding protein |
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Gene: RHE_PF00090: probable sugar ABC transporter, ATP-binding protein |
Gene: pRL120226: probable sugar ABC transporter, ATP-binding protein |
Gene: NGR_b20260: probable sugar ABC transporter, ATP-binding protein |
Gene: RPA3471: probable sugar ABC transporter, ATP-binding protein |
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Gene: Xaut_0503: probable sugar ABC transporter, ATP-binding protein |
probable sugar ABC transporter, ATP-binding protein |
| blr3918 |
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Gene: AZC_4209: ABC transporter substrate-binding protein |
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Gene: blr3918: ABC transporter substrate-binding protein |
Gene: BBta_3554: ABC transporter substrate-binding protein |
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Gene: RHE_PF00091: ABC transporter substrate-binding protein |
Gene: pRL120225: ABC transporter substrate-binding protein |
Gene: NGR_b20250: ABC transporter substrate-binding protein |
Gene: RPA3470: ABC transporter substrate-binding protein |
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Gene: Xaut_0502: ABC transporter substrate-binding protein |
ABC transporter substrate-binding protein |
| blr3919 |
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Gene: AZC_4210: probable sugar ABC transporter, permease protein |
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Gene: blr3919: probable sugar ABC transporter, permease protein |
Gene: BBta_3555: probable sugar ABC transporter, permease protein |
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Gene: RHE_PF00092: probable sugar ABC transporter, permease protein |
Gene: pRL120224: probable sugar ABC transporter, permease protein |
Gene: NGR_b20240: probable sugar ABC transporter, permease protein |
Gene: RPA3469: probable sugar ABC transporter, permease protein |
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Gene: Xaut_0501: probable sugar ABC transporter, permease protein |
probable sugar ABC transporter, permease protein |
| blr3920 |
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Gene: AZC_4211: putative sugar uptake ABC transporter permease protein |
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Gene: blr3920: putative sugar uptake ABC transporter permease protein |
Gene: BBta_3556: putative sugar uptake ABC transporter permease protein |
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Gene: RHE_PF00093: putative sugar uptake ABC transporter permease protein |
Gene: pRL120223: putative sugar uptake ABC transporter permease protein |
Gene: NGR_b20230: putative sugar uptake ABC transporter permease protein |
Gene: RPA3468: putative sugar uptake ABC transporter permease protein |
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Gene: Xaut_0500: putative sugar uptake ABC transporter permease protein |
putative sugar uptake ABC transporter permease protein |
| blr3921 |
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Gene: blr3921: NAD-dependent epimerase/dehydratase |
Gene: BBta_3557: NAD-dependent epimerase/dehydratase |
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Gene: RHE_PF00088: NAD-dependent epimerase/dehydratase |
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Gene: NGR_b20280: NAD-dependent epimerase/dehydratase |
Gene: RPA3467: NAD-dependent epimerase/dehydratase |
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NAD-dependent epimerase/dehydratase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |