Regulog AAur_4078 - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Galactosides utilization
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 21 sites [see more]

Member of regulog collections

By taxonomy - Micrococcineae
By TF family - LacI
By pathway - Galactosides utilization

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1	5	2
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24
Beutenbergia cavernae DSM 12333	6	2
Brachybacterium faecium DSM 4810	11	3
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603	7	4
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
Bfae_04140	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	* Brachybacterium faecium DSM 4810 Site: position = -121 score = 5.74681 sequence = TACTGTAATCGATCACAGTC Gene: Bfae_04140: Predicted galactosides ABC transporter, substrate-binding protein	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, substrate-binding protein
Bfae_04130	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810 Gene: Bfae_04130: Predicted galactosides ABC transporter, permease protein 2	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, permease protein 2
Bfae_04120	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810 Gene: Bfae_04120: Predicted galactosides ABC transporter, permease protein 1	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, permease protein 1
ganA3	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	2 Brachybacterium faecium DSM 4810 Gene: Bfae_04110: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) Gene: Bfae_04100: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)

CRON 2.
ganA2	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	* Jonesia denitrificans DSM 20603 Site: position = -49 score = 5.14695 sequence = GTCTGTGACCGGTCACAGAC Site: position = -136 score = 5.77052 sequence = CACTGGGAGCGGGCACAGTT Gene: Jden_2125: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)

CRON 3.
SAV_1326	* Arthrobacter aurescens TC1 Site: position = -177 score = 5.87147 sequence = AACTGTGTGCGCTCCCAGTA Site: position = -90 score = 5.9381 sequence = AACTGGAACCGCTCACAGTC Gene: AAur_4081: Predicted galactosides ABC transporter, substrate-binding protein	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	* Brachybacterium faecium DSM 4810 Site: position = -79 score = 5.86552 sequence = GACTGTAAACGATCACAGTT Site: position = -179 score = 4.90849 sequence = AACTGGAATCGATCACGGGT Gene: Bfae_04000: Predicted galactosides ABC transporter, substrate-binding protein	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	* Jonesia denitrificans DSM 20603 Site: position = -178 score = 5.549 sequence = CGCTGTGCGCGGTCACAGCC Site: position = -89 score = 5.52215 sequence = TCCTGTGACCGGTCACAGCG Gene: Jden_0310: Predicted galactosides ABC transporter, substrate-binding protein	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, substrate-binding protein
SAV_1327	Arthrobacter aurescens TC1 Gene: AAur_4080: Predicted galactosides ABC transporter, permease protein 1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810 Gene: Bfae_04010: Predicted galactosides ABC transporter, permease protein 1	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603 Gene: Jden_0309: Predicted galactosides ABC transporter, permease protein 1	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, permease protein 1
SAV_1328	Arthrobacter aurescens TC1 Gene: AAur_4079: Predicted galactosides ABC transporter, permease protein 2	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810 Gene: Bfae_04020: Predicted galactosides ABC transporter, permease protein 2	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603 Gene: Jden_0308: Predicted galactosides ABC transporter, permease protein 2	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, permease protein 2
SAV_1329	Arthrobacter aurescens TC1 Gene: AAur_4078: Predicted galactosides utilization transcriptional regulator, LacI-family	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	* Beutenbergia cavernae DSM 12333 Site: position = -73 score = 5.05964 sequence = AACCGTGATCGTGCACAGGA Site: position = -142 score = 5.3892 sequence = GGCTGGGACCGTGCACAGCA Gene: Bcav_3075: Predicted galactosides utilization transcriptional regulator, LacI-family	Brachybacterium faecium DSM 4810 Gene: Bfae_04030: Predicted galactosides utilization transcriptional regulator, LacI-family	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603 Gene: Jden_0307: Predicted galactosides utilization transcriptional regulator, LacI-family	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides utilization transcriptional regulator, LacI-family

CRON 4.
lacA	* Arthrobacter aurescens TC1 Site: position = -123 score = 5.9381 sequence = GACTGTGAGCGGTTCCAGTT Site: position = -36 score = 5.87147 sequence = TACTGGGAGCGCACACAGTT Gene: AAur_4082: Beta-galactosidase (EC 3.2.1.23)	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	* Beutenbergia cavernae DSM 12333 Site: position = -147 score = 5.05964 sequence = TCCTGTGCACGATCACGGTT Site: position = -78 score = 5.3892 sequence = TGCTGTGCACGGTCCCAGCC Gene: Bcav_3076: Beta-galactosidase (EC 3.2.1.23)	* Brachybacterium faecium DSM 4810 Site: position = 3 score = 4.90849 sequence = ACCCGTGATCGATTCCAGTT Site: position = -97 score = 5.86552 sequence = AACTGTGATCGTTTACAGTC Gene: Bfae_03990: Beta-galactosidase (EC 3.2.1.23)	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	* Jonesia denitrificans DSM 20603 Site: position = -154 score = 5.52215 sequence = CGCTGTGACCGGTCACAGGA Site: position = -65 score = 5.549 sequence = GGCTGTGACCGCGCACAGCG Gene: Jden_0311: Beta-galactosidase (EC 3.2.1.23)	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Beta-galactosidase (EC 3.2.1.23)
Bcav_3077	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333 Gene: Bcav_3077: Predicted galactosides ABC transporter, substrate-binding protein	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, substrate-binding protein
Bcav_3078	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333 Gene: Bcav_3078: Predicted galactosides ABC transporter, permease protein	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, permease protein
Bcav_3079	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333 Gene: Bcav_3079: Predicted galactosides ABC transporter, permease protein 2	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted galactosides ABC transporter, permease protein 2
ganA	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333 Gene: Bcav_3080: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Brachybacterium faecium DSM 4810 Gene: Bfae_03980: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	* Jonesia denitrificans DSM 20603 Site: position = -213 score = 6.02476 sequence = AACTGGGAGCGCGCACAGTC Site: position = -135 score = 5.45619 sequence = CCCTGTGACCGGTTACAGTA Gene: Jden_0385: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AAur_4078 - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --