Regulog RhaR - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Rhamnose utilization
Effector:	Rhamnose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
By TF family - LacI
By effector - Rhamnose
By pathway - Rhamnose utilization

Statistics of regulated genes
Genome	Genes	Operons
Actinosynnema mirum DSM 43827	14	3
Saccharopolyspora erythraea NRRL 2338	6	4
Saccharomonospora viridis DSM 43017
Nakamurella multipartita DSM 44233
Frankia sp. EAN1pec
Frankia sp. CcI3
Acidothermus cellulolyticus 11B
Nocardioides sp. JS614
Propionibacterium acnes KPA171202

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
rhiL	* Actinosynnema mirum DSM 43827 Site: position = -132 score = 4.74619 sequence = CCTGTGAACCGATTCAACGC Site: position = -34 score = 5.07539 sequence = GGCTTGAACCGATTCAACCA Gene: Amir_0970: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
rhiF	Actinosynnema mirum DSM 43827 Gene: Amir_0971: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiG	Actinosynnema mirum DSM 43827 Gene: Amir_0972: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Putatuve rhamnogalacturonides ABC transporter, permease component 2
Amir_0973	Actinosynnema mirum DSM 43827 Gene: Amir_0973: hypothetical protein	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	hypothetical protein
rhaM	Actinosynnema mirum DSM 43827 Gene: Amir_0974: L-rhamnose mutarotase	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	L-rhamnose mutarotase
rhaR	2 Actinosynnema mirum DSM 43827* Gene: Amir_0975: Transcriptional regulator of rhamnose utilization, LacI family Site: position = -167 score = 5.09587 sequence = GGAATGAAAGGTTTCAATCT Site: position = -46 score = 4.61003 sequence = CGGCTAAATCGTTTCAAGCT Gene: Amir_3040: Transcriptional regulator of rhamnose utilization, LacI family	* Saccharopolyspora erythraea NRRL 2338 Site: position = -45 score = 4.79299 sequence = GTCGTGAATCGTTTTACATC Gene: SACE_5204: Transcriptional regulator of rhamnose utilization, LacI family	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Transcriptional regulator of rhamnose utilization, LacI family

CRON 2.
rhaY	Actinosynnema mirum DSM 43827	2 Saccharopolyspora erythraea NRRL 2338* Site: position = -116 score = 4.66511 sequence = GCTATAAATCGTTTCACAGG Gene: SACE_4106: Predicted L-rhamnose permease RhaY Site: position = -43 score = 4.86693 sequence = TGCCTGTAACGTTTCATCCA Gene: SACE_5203: Predicted L-rhamnose permease RhaY	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Predicted L-rhamnose permease RhaY

CRON 3.
rhaG	* Actinosynnema mirum DSM 43827 Site: position = -152 score = 4.61003 sequence = AGCTTGAAACGATTTAGCCG Site: position = -31 score = 5.09587 sequence = AGATTGAAACCTTTCATTCC Gene: Amir_3041: L-rhamnose ABC transporter, duplicated ATP-binding component	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	L-rhamnose ABC transporter, duplicated ATP-binding component
rhaH	Actinosynnema mirum DSM 43827 Gene: Amir_3042: L-rhamnose ABC transporter, permease component 2	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	L-rhamnose ABC transporter, permease component 2
rhaJ	Actinosynnema mirum DSM 43827 Gene: Amir_3043: L-rhamnose ABC transporter, permease component 1	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	L-rhamnose ABC transporter, permease component 1
rhaF	Actinosynnema mirum DSM 43827 Gene: Amir_3044: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein	Saccharopolyspora erythraea NRRL 2338	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
rhaI	Actinosynnema mirum DSM 43827 Gene: Amir_3045: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)	* Saccharopolyspora erythraea NRRL 2338 Site: position = -328 score = 4.66511 sequence = CCTGTGAAACGATTTATAGC Gene: SACE_4105: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec Gene: Franean1_4673: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
rhaEW	Actinosynnema mirum DSM 43827 Gene: Amir_3046: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_4104: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec Gene: Franean1_4672: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
rhaB	Actinosynnema mirum DSM 43827 Gene: Amir_3047: Rhamnulokinase (EC 2.7.1.5)	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_4103: Rhamnulokinase (EC 2.7.1.5)	Saccharomonospora viridis DSM 43017	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec Gene: Franean1_4671: Rhamnulokinase (EC 2.7.1.5)	Frankia sp. CcI3	Acidothermus cellulolyticus 11B	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Rhamnulokinase (EC 2.7.1.5)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhaR - Frankineae/Propionibacterineae/Pseudonocardiaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --