Regulon of RhaR in Actinosynnema mirum DSM 43827
| Regulator type: | Transcription factor |
| TF locus tag: | Amir_0975, Amir_3040 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Frankineae/Propionibacterineae/Pseudonocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - LacI
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -132
Score: 4.7 Sequence: CCTGTGAACCGATTCAACGC
Position: -34
Score: 5.1 Sequence: GGCTTGAACCGATTCAACCA
Locus tag: Amir_0970
Name: rhiL Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Locus tag: Amir_0971
Name: rhiF Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
Locus tag: Amir_0972
Name: rhiG Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: Amir_0973
Name: null Funciton: hypothetical protein
Locus tag: Amir_0974
Name: rhaM Funciton: L-rhamnose mutarotase
Locus tag: Amir_0975
Name: rhaR Funciton: Transcriptional regulator of rhamnose utilization, LacI family |
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rhiL
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Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
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rhiF
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Putatuve rhamnogalacturonides ABC transporter, permease component 1
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rhiG
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Putatuve rhamnogalacturonides ABC transporter, permease component 2
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hypothetical protein
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rhaM
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L-rhamnose mutarotase
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rhaR
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Transcriptional regulator of rhamnose utilization, LacI family
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Position: -167
Score: 5.1 Sequence: GGAATGAAAGGTTTCAATCT
Position: -46
Score: 4.6 Sequence: CGGCTAAATCGTTTCAAGCT
Locus tag: Amir_3040
Name: rhaR Funciton: Transcriptional regulator of rhamnose utilization, LacI family |
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rhaR
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Transcriptional regulator of rhamnose utilization, LacI family
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Position: -152
Score: 4.6 Sequence: AGCTTGAAACGATTTAGCCG
Position: -31
Score: 5.1 Sequence: AGATTGAAACCTTTCATTCC
Locus tag: Amir_3041
Name: rhaG Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: Amir_3042
Name: rhaH Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: Amir_3043
Name: rhaJ Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: Amir_3044
Name: rhaF Funciton: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
Locus tag: Amir_3045
Name: rhaI Funciton: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
Locus tag: Amir_3046
Name: rhaEW Funciton: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Amir_3047
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5) |
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rhaG
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L-rhamnose ABC transporter, duplicated ATP-binding component
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rhaH
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L-rhamnose ABC transporter, permease component 2
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rhaJ
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L-rhamnose ABC transporter, permease component 1
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rhaF
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L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
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rhaI
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Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
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rhaEW
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Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
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rhaB
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Rhamnulokinase (EC 2.7.1.5)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |