Regulog MalR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Maltose utilization; Maltodextrin utilization
Effector:	Maltose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 44 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By TF family - LacI
By effector - Maltose
By pathway - Maltose utilization
By pathway - Maltodextrin utilization

Statistics of regulated genes
Genome	Genes	Operons
Alteromonadales bacterium TW-7	9	6
Alteromonas macleodii 'Deep ecotype'	12	6
Colwellia psychrerythraea 34H	10	7
Glaciecola sp. HTCC2999	7	4
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas atlantica T6c	14	7
Pseudoalteromonas haloplanktis TAC125	8	4
Pseudoalteromonas tunicata D2	7	5

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
malZ	* Alteromonadales bacterium TW-7 Site: position = -124 score = 5.91903 sequence = TTGTGCATACGTATGCAGTC Gene: ATW7_07444: Maltodextrin glucosidase (EC 3.2.1.20)	Alteromonas macleodii 'Deep ecotype'	* Colwellia psychrerythraea 34H Site: position = -149 score = 5.74289 sequence = TTATACATACGTATGCAAAG Site: position = -220 score = 5.98268 sequence = TCTTGAATACGTATGCAAGG Site: position = -180 score = 6.06924 sequence = TATTACATACGTATGCAATT Gene: CPS_0984: Maltodextrin glucosidase (EC 3.2.1.20)	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	* Pseudoalteromonas haloplanktis TAC125 Site: position = -129 score = 6.10375 sequence = TAGTGCATACGTATGCAGTA Gene: PSHAa1351: Maltodextrin glucosidase (EC 3.2.1.20)	* Pseudoalteromonas tunicata D2 Site: position = -125 score = 5.8739 sequence = AAATGCATACGTATGCATGC Gene: PTD2_18670: Maltodextrin glucosidase (EC 3.2.1.20)	Maltodextrin glucosidase (EC 3.2.1.20)

CRON 2.
amyA	2 Alteromonadales bacterium TW-7* Gene: ATW7_07419: Alpha-amylase (EC 3.2.1.1) Site: position = -86 score = 5.88993 sequence = ACCTGAATACGTATGCAGCA Gene: ATW7_07424: Alpha-amylase (EC 3.2.1.1)	* Alteromonas macleodii 'Deep ecotype' Site: position = -130 score = 6.03707 sequence = TTTTGAATACGTATGCATGT Gene: MADE_01887: Alpha-amylase (EC 3.2.1.1)	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -99 score = 4.75559 sequence = ATATGAAATCGTATGCAGGG Gene: GHTCC_010100005130: Alpha-amylase (EC 3.2.1.1)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -95 score = 5.44769 sequence = TGATGAATACGTATGTAGGG Gene: Patl_2340: Alpha-amylase (EC 3.2.1.1)	2 Pseudoalteromonas haloplanktis TAC125* Site: position = -91 score = 5.82896 sequence = AACTGAATACGTATGCAGCG Gene: PSHAa1355: Alpha-amylase (EC 3.2.1.1) Gene: PSHAa1357: Alpha-amylase (EC 3.2.1.1)	* Pseudoalteromonas tunicata D2 Site: position = -83 score = 6.09858 sequence = GACTGAATACGTATGCAATT Gene: PTD2_18700: Alpha-amylase (EC 3.2.1.1)	Alpha-amylase (EC 3.2.1.1)
pulA2	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_2339: Putative pullulanase (Alpha-dextrin endo-1,6-alpha-glucosidase) EC=3.2.1.41	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Putative pullulanase (Alpha-dextrin endo-1,6-alpha-glucosidase) EC=3.2.1.41
aglA	Alteromonadales bacterium TW-7	* Alteromonas macleodii 'Deep ecotype' Site: position = -120 score = 4.92389 sequence = CAATGAATACGTATGTTTAT Gene: MADE_03950: Alpha-glucosidase (EC 3.2.1.20)	* Colwellia psychrerythraea 34H Site: position = -131 score = 6.06924 sequence = AATTGCATACGTATGTAATA Site: position = -91 score = 5.98268 sequence = CCTTGCATACGTATTCAAGA Site: position = -162 score = 5.74289 sequence = CTTTGCATACGTATGTATAA Gene: CPS_0983: Alpha-glucosidase (EC 3.2.1.20)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100005135: Alpha-glucosidase (EC 3.2.1.20)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_2338: Alpha-glucosidase (EC 3.2.1.20)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Alpha-glucosidase (EC 3.2.1.20)
malT2	Alteromonadales bacterium TW-7 Gene: ATW7_07414: Predicted maltose transporter MalT	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1356: Predicted maltose transporter MalT	Pseudoalteromonas tunicata D2 Gene: PTD2_18705: Predicted maltose transporter MalT	Predicted maltose transporter MalT
glk	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H Gene: CPS_0982: Glucokinase (EC 2.7.1.2)	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Glucokinase (EC 2.7.1.2)

CRON 3.
amyA3	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	* Colwellia psychrerythraea 34H Site: position = -129 score = 5.53181 sequence = TTATGAATACGTATGTAGGG Gene: CPS_3370: Alpha-amylase precursor (EC 3.2.1.1)	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Alpha-amylase precursor (EC 3.2.1.1)

CRON 4.
glgP	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -122 score = 5.35222 sequence = AAATGCATACGAATTCAGTC Gene: GHTCC_010100010210: Glycogen phosphorylase (EC 2.4.1.1)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -166 score = 5.81646 sequence = GGTTGAATACGTATTCAACC Gene: Patl_2197: Glycogen phosphorylase (EC 2.4.1.1)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Glycogen phosphorylase (EC 2.4.1.1)

CRON 5.
malQ	Alteromonadales bacterium TW-7	* Alteromonas macleodii 'Deep ecotype' Site: position = -124 score = 5.17798 sequence = TATTGCAATCGTATTCAGAT Gene: MADE_01251: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -83 score = 5.96821 sequence = TTTTGCAAACGTATTCAATA Gene: GHTCC_010100004775: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -90 score = 5.68746 sequence = TAATGCAAACGTATTCAACT Gene: Patl_1635: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
glgB	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01252: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100004780: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_1636: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
glgX	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01253: Glycogen debranching enzyme (EC 3.2.1.-)	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100004785: Glycogen debranching enzyme (EC 3.2.1.-)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_1637: Glycogen debranching enzyme (EC 3.2.1.-)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Glycogen debranching enzyme (EC 3.2.1.-)

CRON 6.
susB	* Alteromonadales bacterium TW-7 Site: position = -85 score = 5.68379 sequence = AAATGAATACGTATGTAGAT Gene: ATW7_17172: Alpha-glucosidase (EC 3.2.1.20)	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000760: Alpha-glucosidase (EC 3.2.1.20)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	* Pseudoalteromonas haloplanktis TAC125 Site: position = -87 score = 5.74019 sequence = CCCTGAATACGTATGCAACC Gene: PSHAa2848: Alpha-glucosidase (EC 3.2.1.20)	* Pseudoalteromonas tunicata D2 Site: position = -83 score = 5.70911 sequence = GTGTGAATACGTATGCAAGC Gene: PTD2_01461: Alpha-glucosidase (EC 3.2.1.20)	Alpha-glucosidase (EC 3.2.1.20)

CRON 7.
amyA2	* Alteromonadales bacterium TW-7 Site: position = -110 score = 6.11193 sequence = TAATGCATACGTATTCAGTT Gene: ATW7_11801: Alpha-amylase precursor (EC 3.2.1.1)	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -131 score = 5.77673 sequence = ATTTACATACGTATTCATTT Gene: Patl_2859: Alpha-amylase precursor (EC 3.2.1.1)	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -83 score = 6.12423 sequence = TTTTGCATACGTATTCAAAG Gene: PTD2_20842: Alpha-amylase precursor (EC 3.2.1.1)	Alpha-amylase precursor (EC 3.2.1.1)

CRON 8.
susA	Alteromonadales bacterium TW-7 Gene: ATW7_07429: Neopullulanase (EC 3.2.1.135)	* Alteromonas macleodii 'Deep ecotype' Site: position = -97 score = 5.51473 sequence = CGGTGAATACGTATGCAGAG Gene: MADE_01888: Neopullulanase (EC 3.2.1.135)	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1354: Neopullulanase (EC 3.2.1.135)	Pseudoalteromonas tunicata D2 Gene: PTD2_18690: Neopullulanase (EC 3.2.1.135)	Neopullulanase (EC 3.2.1.135)
malT	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01889: Predicted maltose transporter MalT	* Colwellia psychrerythraea 34H Site: position = -219 score = 5.71084 sequence = TAGTGAATACGTATGTAACA Gene: CPS_0975: Predicted maltose transporter MalT	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -213 score = 5.93078 sequence = ATCTGAATACGTATGCAAGC Gene: Patl_2187: Predicted maltose transporter MalT	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Predicted maltose transporter MalT
cgt	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01890: Cyclomaltodextrin glucanotransferase EC=2.4.1.19	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -79 score = 5.67266 sequence = ATGTGAATACGTATGTAAAA Gene: GHTCC_010100006907: Cyclomaltodextrin glucanotransferase EC=2.4.1.19	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_2186: Cyclomaltodextrin glucanotransferase EC=2.4.1.19	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Cyclomaltodextrin glucanotransferase EC=2.4.1.19
omp(Mal)	* Alteromonadales bacterium TW-7 Site: position = -139 score = 5.97465 sequence = GCTTGAATACGTATGCATAA Gene: ATW7_07439: Predicted maltose-specific outer membrane transporter, TonB-dependent	* Alteromonas macleodii 'Deep ecotype' Site: position = -134 score = 6.05308 sequence = TATTGAATACGTATGCAGGC Gene: MADE_01879: Predicted maltose-specific outer membrane transporter, TonB-dependent	* Colwellia psychrerythraea 34H Site: position = -207 score = 5.90837 sequence = CGTTGCATACGTATTCAATG Site: position = -166 score = 5.76692 sequence = CTCTGAATACGTATGCAACG Gene: CPS_0993: Predicted maltose-specific outer membrane transporter, TonB-dependent	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	2 Pseudoalteromonas atlantica T6c* Gene: Patl_3818: Predicted maltose-specific outer membrane transporter, TonB-dependent Site: position = -144 score = 6.18928 sequence = TACTGAATACGTATGCAAGA Gene: Patl_1938: Predicted maltose-specific outer membrane transporter, TonB-dependent	* Pseudoalteromonas haloplanktis TAC125 Site: position = -117 score = 6.09751 sequence = TGTTGAATACGTATGCATAA Gene: PSHAa1352: Predicted maltose-specific outer membrane transporter, TonB-dependent	* Pseudoalteromonas tunicata D2 Site: position = -153 score = 6.12385 sequence = TTTTGAATACGTATGCAGTC Gene: PTD2_18680: Predicted maltose-specific outer membrane transporter, TonB-dependent	Predicted maltose-specific outer membrane transporter, TonB-dependent
trpH	Alteromonadales bacterium TW-7 Gene: ATW7_07434: Tryptophan halogenase	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01880: Tryptophan halogenase	Colwellia psychrerythraea 34H Gene: CPS_0992: Tryptophan halogenase	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	2 Pseudoalteromonas atlantica T6c Gene: Patl_3817: Tryptophan halogenase Gene: Patl_1939: Tryptophan halogenase	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1353: Tryptophan halogenase	Pseudoalteromonas tunicata D2 Gene: PTD2_18685: Tryptophan halogenase	Tryptophan halogenase

CRON 9.
omp(Mal)2	* Alteromonadales bacterium TW-7 Site: position = -108 score = 6.05308 sequence = TACTGCATACGTATTCATCA Gene: ATW7_17257: Predicted maltose-specific outer membrane transporter, TonB-dependent	* Alteromonas macleodii 'Deep ecotype' Site: position = -130 score = 5.72392 sequence = AAATGAATACGTATGCACAG Gene: MADE_01881: Predicted maltose-specific outer membrane transporter, TonB-dependent	* Colwellia psychrerythraea 34H Site: position = -129 score = 6.30448 sequence = TTTTGAATACGTATGCAAAA Gene: CPS_1693: Predicted maltose-specific outer membrane transporter, TonB-dependent	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -167 score = 5.99568 sequence = TGTTGAATACGTATGCAGTG Gene: Patl_1940: Predicted maltose-specific outer membrane transporter, TonB-dependent	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Predicted maltose-specific outer membrane transporter, TonB-dependent
pulA	Alteromonadales bacterium TW-7 Gene: ATW7_17262: Alpha-1,6-glucosidases, pullulanase-type	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01882: Alpha-1,6-glucosidases, pullulanase-type	2 Colwellia psychrerythraea 34H* Site: position = -94 score = 5.72088 sequence = GCTTGAATACGTATGTAAGA Gene: CPS_0996: Alpha-1,6-glucosidases, pullulanase-type Gene: CPS_1694: Alpha-1,6-glucosidases, pullulanase-type	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_1941: Alpha-1,6-glucosidases, pullulanase-type	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Alpha-1,6-glucosidases, pullulanase-type

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MalR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --