Regulog SMb21706 - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sugar utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	1	1
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099	5	1
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	6	1
Rhizobium leguminosarum bv. viciae 3841	12	3
Rhizobium sp. NGR234	2	1
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	6	1
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
SMb21706	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -56 score = 5.95768 sequence = TTGAAAAAACGATTTCTCAC Site: position = -78 score = 6.10584 sequence = CAGAGAAAACGTTTTCTCTA Gene: Atu5078: Transcriptional regulator, LacI family	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -149 score = 6.24137 sequence = TTGAGAAAAGGTTTTTCCAA Site: position = -81 score = 6.22365 sequence = AAGAGAAAACCTTTTCCCAA Gene: mlr2242: Transcriptional regulator, LacI family	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -150 score = 6.21307 sequence = TTGGTAAAAGCTTTTCTCAA Site: position = -182 score = 6.60819 sequence = ATGAGAAAACCTTTTCTCAC Gene: RHE_CH03845: Transcriptional regulator, LacI family	2 Rhizobium leguminosarum bv. viciae 3841* Site: position = -72 score = 5.44887 sequence = TTGATAAAACCTTTTAACAG Site: position = -41 score = 5.35947 sequence = CTGCTAAAAGCTTTTATCAT Gene: pRL100262: Transcriptional regulator, LacI family Site: position = -71 score = 6.60819 sequence = ATGAGAAAACCTTTTCTCAC Site: position = -39 score = 6.05395 sequence = TTGGTAAAAGCTTTTCTCAG Gene: RL4378: Transcriptional regulator, LacI family	* Rhizobium sp. NGR234 Site: position = -45 score = 6.69502 sequence = ATGAGAAAACGTTTTCTCAT Gene: NGR_b18600: Transcriptional regulator, LacI family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -297 score = 6.51017 sequence = GTGAGAAAACCTTTTCTCAG Site: position = -264 score = 6.72782 sequence = TTGAGAAAAGGTTTTCTCAT Gene: SMb21706: Transcriptional regulator, LacI family	Xanthobacter autotrophicus Py2	Transcriptional regulator, LacI family
SMb20634	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr2244: sugar ABC transporter, periplasmic solute-binding protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH03844: sugar ABC transporter, periplasmic solute-binding protein	2 Rhizobium leguminosarum bv. viciae 3841* Gene: RL4377: sugar ABC transporter, periplasmic solute-binding protein Site: position = -127 score = 5.44887 sequence = CTGTTAAAAGGTTTTATCAA Site: position = -158 score = 5.35947 sequence = ATGATAAAAGCTTTTAGCAG Gene: pRL100263: sugar ABC transporter, periplasmic solute-binding protein	Rhizobium sp. NGR234 Gene: NGR_b18590: sugar ABC transporter, periplasmic solute-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20634: sugar ABC transporter, periplasmic solute-binding protein	Xanthobacter autotrophicus Py2	sugar ABC transporter, periplasmic solute-binding protein
SMb20633	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu5080: sugar ABC transporter, permease protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr2245: sugar ABC transporter, permease protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH03843: sugar ABC transporter, permease protein	2 Rhizobium leguminosarum bv. viciae 3841 Gene: RL4376: sugar ABC transporter, permease protein Gene: pRL100264: sugar ABC transporter, permease protein	Rhizobium sp. NGR234 Gene: NGR_b18580: sugar ABC transporter, permease protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20633: sugar ABC transporter, permease protein	Xanthobacter autotrophicus Py2	sugar ABC transporter, permease protein
SMb20632	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu5081: sugar ABC transporter, permease protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr2246: sugar ABC transporter, permease protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH03842: sugar ABC transporter, permease protein	2 Rhizobium leguminosarum bv. viciae 3841 Gene: RL4375: sugar ABC transporter, permease protein Gene: pRL100265: sugar ABC transporter, permease protein	Rhizobium sp. NGR234 Gene: NGR_b18570: sugar ABC transporter, permease protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20632: sugar ABC transporter, permease protein	Xanthobacter autotrophicus Py2	sugar ABC transporter, permease protein
PF07944	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu5082: Protein of unknown function DUF1680	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr2247: Protein of unknown function DUF1680	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH03841: Protein of unknown function DUF1680	2 Rhizobium leguminosarum bv. viciae 3841 Gene: RL4374: Protein of unknown function DUF1680 Gene: pRL100266: Protein of unknown function DUF1680	Rhizobium sp. NGR234 Gene: NGR_b18560: Protein of unknown function DUF1680	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20631: Protein of unknown function DUF1680	Xanthobacter autotrophicus Py2	Protein of unknown function DUF1680
SMb20630	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu5083: sugar ABC transporter, ATP binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH03840: sugar ABC transporter, ATP binding protein	2 Rhizobium leguminosarum bv. viciae 3841 Gene: RL4373: sugar ABC transporter, ATP binding protein Gene: pRL100267: sugar ABC transporter, ATP binding protein	Rhizobium sp. NGR234 Gene: NGR_b18550: sugar ABC transporter, ATP binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20630: sugar ABC transporter, ATP binding protein	Xanthobacter autotrophicus Py2	sugar ABC transporter, ATP binding protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SMb21706 - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --