Statistics of regulated genes

Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	7	2
Sinorhizobium meliloti 1021	7	2
Rhizobium sp. NGR234	7	2
Rhizobium etli CFN 42	9	3
Rhizobium leguminosarum bv. viciae 3841
Azorhizobium caulinodans ORS 571
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Brucella melitensis 16M	9	2
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009
Nitrobacter winogradskyi Nb-255
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
thuE	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -210 score = 6.58951 sequence = AATTGAAAACGATTTCAATT Site: position = -58 score = 5.00467 sequence = AGTCAAAAGCGCTTTCAATT Gene: Atu3338: Putative trehalose ABC transporter, substrate-binding protein	* Sinorhizobium meliloti 1021 Site: position = -258 score = 5.99126 sequence = GATCCAAATCGTTTTAAATT Site: position = -63 score = 4.89171 sequence = TACCCAAACCGTTTTCGAAT Gene: SMb20325: Putative trehalose ABC transporter, substrate-binding protein	* Rhizobium sp. NGR234 Site: position = -252 score = 5.16714 sequence = TAGCCCAATCGTTTTAAATT Site: position = -68 score = 5.09886 sequence = CAGCCAAACCGTTTTCGAAT Gene: NGR_b23140: Putative trehalose ABC transporter, substrate-binding protein	* Rhizobium etli CFN 42 Site: position = -194 score = 6.68579 sequence = AATTGAAATCGATTTCAATT Site: position = -34 score = 5.62053 sequence = TGTCCAAATCGATTTCAATT Gene: RHE_PF00210: Putative trehalose ABC transporter, substrate-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120035: Putative trehalose ABC transporter, substrate-binding protein	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	* Brucella melitensis 16M Site: position = -244 score = 5.84854 sequence = AATCCAAACCGCTTTCAATC Site: position = -75 score = 5.24342 sequence = TACCCAAACCGTTTTCGATT Gene: BMEII0945: Putative trehalose ABC transporter, substrate-binding protein	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Putative trehalose ABC transporter, substrate-binding protein
thuF	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3339: Putative trehalose ABC transporter, inner membrane protein	Sinorhizobium meliloti 1021 Gene: SMb20326: Putative trehalose ABC transporter, inner membrane protein	Rhizobium sp. NGR234 Gene: NGR_b23130: Putative trehalose ABC transporter, inner membrane protein	Rhizobium etli CFN 42 Gene: RHE_PF00209: Putative trehalose ABC transporter, inner membrane protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120036: Putative trehalose ABC transporter, inner membrane protein	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	2 Brucella melitensis 16M Gene: BMEII0944: Putative trehalose ABC transporter, inner membrane protein Gene: BMEII0943: Putative trehalose ABC transporter, inner membrane protein	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Putative trehalose ABC transporter, inner membrane protein
thuG	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3340: Putative trehalose ABC transporter, inner membrane protein	Sinorhizobium meliloti 1021 Gene: SMb20327: Putative trehalose ABC transporter, inner membrane protein	Rhizobium sp. NGR234 Gene: NGR_b23120: Putative trehalose ABC transporter, inner membrane protein	Rhizobium etli CFN 42 Gene: RHE_PF00208: Putative trehalose ABC transporter, inner membrane protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120037: Putative trehalose ABC transporter, inner membrane protein	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Brucella melitensis 16M Gene: BMEII0942: Putative trehalose ABC transporter, inner membrane protein	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Putative trehalose ABC transporter, inner membrane protein
thuK	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3341: Putative trehalose ABC transporter, ATP-binding protein	Sinorhizobium meliloti 1021 Gene: SMb20328: Putative trehalose ABC transporter, ATP-binding protein	Rhizobium sp. NGR234 Gene: NGR_b23110: Putative trehalose ABC transporter, ATP-binding protein	Rhizobium etli CFN 42 Gene: RHE_PF00207: Putative trehalose ABC transporter, ATP-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120038: Putative trehalose ABC transporter, ATP-binding protein	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	2 Brucella melitensis 16M Gene: BMEII0941: Putative trehalose ABC transporter, ATP-binding protein Gene: BMEII0940: Putative trehalose ABC transporter, ATP-binding protein	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Putative trehalose ABC transporter, ATP-binding protein
thuA	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3342: Trehalose utilization protein ThuA	Sinorhizobium meliloti 1021 Gene: SMb20329: Trehalose utilization protein ThuA	Rhizobium sp. NGR234 Gene: NGR_b23100: Trehalose utilization protein ThuA	Rhizobium etli CFN 42 Gene: RHE_PF00206: Trehalose utilization protein ThuA	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120039: Trehalose utilization protein ThuA	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Brucella melitensis 16M Gene: BMEII0939: Trehalose utilization protein ThuA	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Trehalose utilization protein ThuA
thuB	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3343: Trehalose utilization oxidoreductase protein ThuB	Sinorhizobium meliloti 1021 Gene: SMb20330: Trehalose utilization oxidoreductase protein ThuB	Rhizobium sp. NGR234 Gene: NGR_b23090: Trehalose utilization oxidoreductase protein ThuB	Rhizobium etli CFN 42 Gene: RHE_PF00205: Trehalose utilization oxidoreductase protein ThuB	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120040: Trehalose utilization oxidoreductase protein ThuB	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Brucella melitensis 16M Gene: BMEII0938: Trehalose utilization oxidoreductase protein ThuB	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Trehalose utilization oxidoreductase protein ThuB
CRON 2.
thuR	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -78 score = 6.58951 sequence = AATTGAAATCGTTTTCAATT Site: position = -230 score = 5.00467 sequence = AATTGAAAGCGCTTTTGACT Gene: Atu3337: Putative trehalose utilization regulator ThuR, LacI family	* Sinorhizobium meliloti 1021 Site: position = -240 score = 5.99126 sequence = AATTTAAAACGATTTGGATC Gene: SMb20324: Putative trehalose utilization regulator ThuR, LacI family	* Rhizobium sp. NGR234 Site: position = -141 score = 5.16714 sequence = AATTTAAAACGATTGGGCTA Gene: NGR_b23150: Putative trehalose utilization regulator ThuR, LacI family	* Rhizobium etli CFN 42 Site: position = -257 score = 5.62053 sequence = AATTGAAATCGATTTGGACA Site: position = -97 score = 6.68579 sequence = AATTGAAATCGATTTCAATT Gene: RHE_PF00211: Putative trehalose utilization regulator ThuR, LacI family	Rhizobium leguminosarum bv. viciae 3841	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	* Brucella melitensis 16M Site: position = -126 score = 5.84854 sequence = GATTGAAAGCGGTTTGGATT Gene: BMEII0946: Putative trehalose utilization regulator ThuR, LacI family	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Putative trehalose utilization regulator ThuR, LacI family
CRON 3.
thuA2	Agrobacterium tumefaciens str. C58 (Cereon)	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium etli CFN 42 Site: position = -67 score = 5.6844 sequence = TTTCCAAAGCGCTTTGAATT Gene: RHE_CH03256: Trehalose utilization protein ThuA	Rhizobium leguminosarum bv. viciae 3841	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Trehalose utilization protein ThuA
thuB2	Agrobacterium tumefaciens str. C58 (Cereon)	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium etli CFN 42 Gene: RHE_CH03255: Trehalose utilization oxidoreductase protein ThuB	Rhizobium leguminosarum bv. viciae 3841	Azorhizobium caulinodans ORS 571	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Nitrobacter winogradskyi Nb-255	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Xanthobacter autotrophicus Py2	Trehalose utilization oxidoreductase protein ThuB

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