Regulog HrcA - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By trascription factor - HrcA
- By TF family - HrcA
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 7 | 3 |
| Clostridium beijerincki NCIMB 8052 | 6 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 7 | 3 |
| Clostridium butyricum 5521 | 6 | 2 |
| Clostridium kluyveri DSM 555 | 7 | 3 |
| Clostridium novyi NT | 6 | 2 |
| Clostridium perfringens ATCC 13124 | 7 | 3 |
| Clostridium tetani E88 | 5 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| groES |
*
Clostridium acetobutylicum ATCC 824 Site: position = -106 score = 7.71992 sequence = TTAGCACTCAAGATTAACGAGTGCTAA Gene: CAC2704: Heat shock protein 60 family co-chaperone GroES |
*
Clostridium beijerincki NCIMB 8052 Site: position = -75 score = 7.62623 sequence = TTAGCACTCGACAATGATGAGTGCTAA Gene: Cbei_0328: Heat shock protein 60 family co-chaperone GroES |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -84 score = 8.08121 sequence = TTAGCACTCAATATTAATGAGTGCTAA Gene: CBO3299: Heat shock protein 60 family co-chaperone GroES |
*
Clostridium butyricum 5521 Site: position = -84 score = 7.70192 sequence = TTAGCACTCGATGATGATGAGTGCTAA Gene: CBY_3050: Heat shock protein 60 family co-chaperone GroES |
*
Clostridium kluyveri DSM 555 Site: position = -84 score = 7.87316 sequence = TTAGCACTCATAATTAATGAGTGCTAA Gene: CKL_0463: Heat shock protein 60 family co-chaperone GroES |
*
Clostridium novyi NT Site: position = -82 score = 7.90997 sequence = TTAGCACTCGATGTTATTGAGTGCTAA Gene: NT01CX_0463: Heat shock protein 60 family co-chaperone GroES |
*
Clostridium perfringens ATCC 13124 Site: position = -64 score = 7.86085 sequence = TTAGCACTCTATATTAATGAGTGCTAA Gene: CPF_2574: Heat shock protein 60 family co-chaperone GroES |
|
Heat shock protein 60 family co-chaperone GroES |
| groEL |
Gene: CAC2703: Heat shock protein 60 family chaperone GroEL |
Gene: Cbei_0329: Heat shock protein 60 family chaperone GroEL |
Gene: CBO3298: Heat shock protein 60 family chaperone GroEL |
Gene: CBY_3051: Heat shock protein 60 family chaperone GroEL |
Gene: CKL_0464: Heat shock protein 60 family chaperone GroEL |
Gene: NT01CX_0462: Heat shock protein 60 family chaperone GroEL |
Gene: CPF_2573: Heat shock protein 60 family chaperone GroEL |
Gene: CTC02413: Heat shock protein 60 family chaperone GroEL |
Heat shock protein 60 family chaperone GroEL |
| CRON 2. | |||||||||
| hrcA |
*
Clostridium acetobutylicum ATCC 824 Site: position = -42 score = 7.56353 sequence = TTAGCACTCAAAGAGAGTGAGTGCTAA Gene: CAC1280: Heat-inducible transcription repressor HrcA |
*
Clostridium beijerincki NCIMB 8052 Site: position = -44 score = 7.62276 sequence = TTAGCACTCGAGGTTAATGAGTGCTAA Gene: Cbei_0828: Heat-inducible transcription repressor HrcA |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -48 score = 7.59736 sequence = TTAGCACTCGTTGCTAGTGAGTGCTAA Gene: CBO2961: Heat-inducible transcription repressor HrcA |
*
Clostridium butyricum 5521 Site: position = -44 score = 7.59736 sequence = TTAGCACTCGCTGCTAATGAGTGCTAA Gene: CBY_3533: Heat-inducible transcription repressor HrcA |
*
Clostridium kluyveri DSM 555 Site: position = -42 score = 7.63256 sequence = TTAGCACTCAATGCTAGCGAGTGCTAA Gene: CKL_0900: Heat-inducible transcription repressor HrcA |
*
Clostridium novyi NT Site: position = -49 score = 7.46091 sequence = TTAGCACTCAACTAAAACGAGTGCTAA Gene: NT01CX_0059: Heat-inducible transcription repressor HrcA |
*
Clostridium perfringens ATCC 13124 Site: position = -43 score = 7.51997 sequence = TTAGCACTCGTTCAGAGTGAGTGCTAA Gene: CPF_2292: Heat-inducible transcription repressor HrcA |
*
Clostridium tetani E88 Site: position = -20 score = 7.66069 sequence = TTAGCACTCAACAAGAGTGAGTGCTAA Gene: CTC02033: Heat-inducible transcription repressor HrcA |
Heat-inducible transcription repressor HrcA |
| grpE |
Gene: CAC1281: Heat shock protein GrpE |
Gene: Cbei_0829: Heat shock protein GrpE |
Gene: CBO2960: Heat shock protein GrpE |
Gene: CBY_3532: Heat shock protein GrpE |
Gene: CKL_0901: Heat shock protein GrpE |
Gene: NT01CX_0058: Heat shock protein GrpE |
Gene: CPF_2291: Heat shock protein GrpE |
Gene: CTC02032: Heat shock protein GrpE |
Heat shock protein GrpE |
| dnaK |
Gene: CAC1282: Chaperone protein DnaK |
Gene: Cbei_0830: Chaperone protein DnaK |
Gene: CBO2959: Chaperone protein DnaK |
Gene: CBY_3531: Chaperone protein DnaK |
Gene: CKL_0902: Chaperone protein DnaK |
Gene: NT01CX_0057: Chaperone protein DnaK |
Gene: CPF_2290: Chaperone protein DnaK |
Gene: CTC02031: Chaperone protein DnaK |
Chaperone protein DnaK |
| dnaJ |
Gene: CAC1283: Chaperone protein DnaJ |
Gene: Cbei_0831: Chaperone protein DnaJ |
Gene: CBO2958: Chaperone protein DnaJ |
Gene: CBY_3530: Chaperone protein DnaJ |
Gene: CKL_0903: Chaperone protein DnaJ |
Gene: NT01CX_0056: Chaperone protein DnaJ |
Gene: CPF_2289: Chaperone protein DnaJ |
Gene: CTC02030: Chaperone protein DnaJ |
Chaperone protein DnaJ |
| CRON 3. | |||||||||
| htpG |
*
Clostridium acetobutylicum ATCC 824 Site: position = -116 score = 7.6544 sequence = TTAGCACTCGTTGATATAGAGTGCTAA Gene: CAC3315: Chaperone protein HtpG |
Gene: Cbei_4160: Chaperone protein HtpG |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -103 score = 6.99513 sequence = TTAGCACTCACTAGCTTAAAGTGCTAA Gene: CBO1985: Chaperone protein HtpG |
Gene: CBY_3904: Chaperone protein HtpG |
*
Clostridium kluyveri DSM 555 Site: position = -202 score = 7.13376 sequence = TTAGCACTCAAGTATTATAAGTGCTAA Gene: CKL_2212: Chaperone protein HtpG |
|
*
Clostridium perfringens ATCC 13124 Site: position = -63 score = 7.13303 sequence = TTAGCACTCAAGTTGTTAGAGTGCTAA Gene: CPF_0417: Chaperone protein HtpG |
*
Clostridium tetani E88 Site: position = -71 score = 6.9392 sequence = TTAGCACTCAGCAAATTGGAGTGCTAA Gene: CTC01489: Chaperone protein HtpG |
Chaperone protein HtpG |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |