Regulog LexA - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides pectinophilus ATCC 43243 | 4 | 3 |
| Blautia hansenii DSM 20583 | 4 | 3 |
| Bryantella formatexigens DSM 14469 | 7 | 4 |
| Clostridiales bacterium 1_7_47_FAA | 11 | 6 |
| Clostridium bolteae ATCC BAA-613 | 12 | 7 |
| Clostridium nexile DSM 1787 | 6 | 4 |
| Clostridium scindens ATCC 35704 | 6 | 4 |
| Dorea formicigenerans ATCC 27755 | 6 | 4 |
| Dorea longicatena DSM 13814 | 5 | 3 |
| Eubacterium eligens ATCC 27750 | 5 | 3 |
| Eubacterium rectale ATCC 33656 | 8 | 5 |
| Roseburia intestinalis L1-82 | 8 | 5 |
| Ruminococcus gnavus ATCC 29149 | 8 | 5 |
| Ruminococcus lactaris ATCC 29176 | 8 | 5 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| recA |
Gene: BACPEC_01584: Recombination protein A |
*
Blautia hansenii DSM 20583 Site: position = -49 score = 5.46141 sequence = ACGAACATAAGTTCGT Gene: BLAHAN_03024: Recombination protein A |
*
Bryantella formatexigens DSM 14469 Site: position = -31 score = 5.46141 sequence = ACGAACATAAGTTCGT Gene: BRYFOR_02052: Recombination protein A |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -29 score = 5.08706 sequence = GAGAACATTTGTTCGA Gene: Cbac1_010100010370: Recombination protein A |
*
Clostridium bolteae ATCC BAA-613 Site: position = -8 score = 4.92428 sequence = GAGAACATTTGTTCGC Gene: CLOBOL_02320: Recombination protein A |
*
Clostridium nexile DSM 1787 Site: position = -19 score = 5.22349 sequence = ACGAACATAAGTTCGC Gene: CLONEX_03018: Recombination protein A |
*
Clostridium scindens ATCC 35704 Site: position = -38 score = 4.99499 sequence = ACGAACGTTCGTTCGA Gene: CLOSCI_01391: Recombination protein A |
*
Dorea formicigenerans ATCC 27755 Site: position = -38 score = 5.08286 sequence = CCGAACATTCGTTCGG Gene: DORFOR_01417: Recombination protein A |
*
Dorea longicatena DSM 13814 Site: position = -38 score = 4.7797 sequence = ACGAACACTCGTTCGA Gene: DORLON_02453: Recombination protein A |
*
Eubacterium eligens ATCC 27750 Site: position = -32 score = 4.68905 sequence = ACGAACACATGTTCAA Gene: EUBELI_01121: Recombination protein A |
*
Eubacterium rectale ATCC 33656 Site: position = -35 score = 5.10199 sequence = ACGAACGTTTGTTCGC Gene: EUBREC_2228: Recombination protein A |
*
Roseburia intestinalis L1-82 Site: position = -29 score = 5.22349 sequence = ACGAACATAAGTTCGC Gene: ROSINTL182_02195: Recombination protein A |
*
Ruminococcus gnavus ATCC 29149 Site: position = -37 score = 4.83467 sequence = GCGAACAACTGTTCGG Gene: RUMGNA_01745: Recombination protein A |
*
Ruminococcus lactaris ATCC 29176 Site: position = -32 score = 5.12597 sequence = ACGAACAACTGTTCGA Gene: RUMLAC_01907: Recombination protein A |
Recombination protein A |
| recX |
Gene: BACPEC_01585: regulatory protein RecX |
Gene: BLAHAN_03023: regulatory protein RecX |
Gene: BRYFOR_02053: regulatory protein RecX |
Gene: Cbac1_010100010365: regulatory protein RecX |
Gene: CLOBOL_02319: regulatory protein RecX |
Gene: CLONEX_03017: regulatory protein RecX |
Gene: CLOSCI_01392: regulatory protein RecX |
Gene: DORFOR_01418: regulatory protein RecX |
Gene: DORLON_02452: regulatory protein RecX |
Gene: EUBELI_01120: regulatory protein RecX |
Gene: EUBREC_2227: regulatory protein RecX |
Gene: ROSINTL182_02193: regulatory protein RecX |
Gene: RUMGNA_01746: regulatory protein RecX |
Gene: RUMLAC_01908: regulatory protein RecX |
regulatory protein RecX |
| CRON 2. | |||||||||||||||
| lexA |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -171 score = 4.92541 sequence = TCAAACATTCGTTTGT Site: position = -133 score = 4.66647 sequence = CCGAACAAATTTTCTG Gene: BACPEC_00341: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Blautia hansenii DSM 20583 Site: position = -192 score = 5.2021 sequence = GCGAACATTTGTTTGT Site: position = -157 score = 5.11085 sequence = AAGAACATACGTTTGT Site: position = -130 score = 4.77341 sequence = TCGAACAAATATTCGA Gene: BLAHAN_02545: SOS-response repressor and protease LexA (EC 3.4.21.88) |
Gene: BRYFOR_04022: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -143 score = 4.72714 sequence = CAGAACATGTGTTCTT Site: position = -105 score = 4.76703 sequence = CAGAACACATGTTTGT Gene: Cbac1_010100027004: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -46 score = 4.53385 sequence = CAGAACGTCTGTTCTT Site: position = -8 score = 5.10191 sequence = CAGAACAAATGTTTGT Gene: CLOBOL_03828: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium nexile DSM 1787 Site: position = -163 score = 4.86301 sequence = CCGAACAACTGTTCTT Site: position = -130 score = 5.23044 sequence = AAGAACAAATGTTTGT Site: position = -94 score = 4.99858 sequence = ACGAACATATTTTCTA Gene: CLONEX_01664: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium scindens ATCC 35704 Site: position = -129 score = 4.82284 sequence = GAAAACATTTGTTTGT Site: position = -81 score = 4.76021 sequence = TCGAACGCATGTTTGT Site: position = -44 score = 4.92344 sequence = TCGAACATATTTTCTA Gene: CLOSCI_00491: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Dorea formicigenerans ATCC 27755 Site: position = -287 score = 5.23608 sequence = TCGAACTTTTGTTCGT Site: position = -259 score = 4.82777 sequence = TCGAACAGTTGTTTGG Site: position = -219 score = 4.87005 sequence = CCGAACATATTTTCTA Gene: DORFOR_01560: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Dorea longicatena DSM 13814 Site: position = -178 score = 4.63126 sequence = ACGAACATGTGTTCCT Site: position = -142 score = 5.02999 sequence = TCGAACACATGTTTGT Site: position = -105 score = 4.92344 sequence = TCGAACATATTTTCTA Gene: DORLON_00532: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Eubacterium eligens ATCC 27750 Site: position = -147 score = 4.5417 sequence = TCAAACAAGTGTTCTG Gene: EUBELI_01008: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Eubacterium rectale ATCC 33656 Site: position = -210 score = 4.97661 sequence = CCGAACATGTGTTTGT Site: position = -169 score = 4.94491 sequence = TCGAACAATCGTTTGT Site: position = -143 score = 4.7061 sequence = ACGAACAAAATTTCGG Gene: EUBREC_1701: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Roseburia intestinalis L1-82 Site: position = 13 score = 4.92943 sequence = TCGAACAAATTTTCGG Gene: ROSINTL182_00056: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Ruminococcus gnavus ATCC 29149 Site: position = -83 score = 5.06667 sequence = CCAAACAAATGTTTGA Gene: RUMGNA_01924: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Ruminococcus lactaris ATCC 29176 Site: position = -170 score = 4.53198 sequence = GAGAACGTATGTTCAT Site: position = -129 score = 5.05309 sequence = CCGAACAGATGTTTGT Site: position = -92 score = 4.97023 sequence = TCGAACATATTTTCGC Gene: RUMLAC_00443: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 3. | |||||||||||||||
| umuC |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -111 score = 4.82848 sequence = GCAAACTTTTGTTCGA Gene: BACPEC_02977: DNA polymerase V involved in DNA-repair |
|
*
Bryantella formatexigens DSM 14469 Site: position = -48 score = 5.0552 sequence = TCGAACGAATGTTCTT Gene: BRYFOR_02062: DNA polymerase V involved in DNA-repair |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -92 score = 5.06659 sequence = AAGAACAGATGTTCGA Gene: Cbac1_010100003194: DNA polymerase V involved in DNA-repair |
*
Clostridium bolteae ATCC BAA-613 Site: position = -122 score = 5.32498 sequence = AAGAACAAATGTTCGA Gene: CLOBOL_00438: DNA polymerase V involved in DNA-repair |
Gene: CLONEX_01031: DNA polymerase V involved in DNA-repair |
|
Gene: DORFOR_00635: DNA polymerase V involved in DNA-repair |
Gene: DORLON_02276: DNA polymerase V involved in DNA-repair |
Gene: EUBELI_20405: DNA polymerase V involved in DNA-repair |
*
Eubacterium rectale ATCC 33656 Site: position = -49 score = 5.38063 sequence = ACAAACATATGTTCTT Gene: EUBREC_1131: DNA polymerase V involved in DNA-repair |
*
Roseburia intestinalis L1-82 Site: position = -66 score = 4.87005 sequence = TCGAACATATTTTCTG Gene: ROSINTL182_03144: DNA polymerase V involved in DNA-repair |
*
Ruminococcus gnavus ATCC 29149 Site: position = -75 score = 4.53077 sequence = GCAAACATACTTTCGA Gene: RUMGNA_00081: DNA polymerase V involved in DNA-repair |
*
Ruminococcus lactaris ATCC 29176 Site: position = -130 score = 4.99582 sequence = AAGAACATACGTTCTA Gene: RUMLAC_00163: DNA polymerase V involved in DNA-repair |
DNA polymerase V involved in DNA-repair |
| BACPEC_01776 |
Gene: BACPEC_02978: hypothetical protein |
|
Gene: BRYFOR_02063: hypothetical protein |
Gene: Cbac1_010100003189: hypothetical protein |
Gene: CLOBOL_00437: hypothetical protein |
Gene: CLONEX_01030: hypothetical protein |
|
Gene: DORFOR_00634: hypothetical protein |
|
|
Gene: EUBREC_1132: hypothetical protein |
Gene: ROSINTL182_03145: hypothetical protein |
Gene: RUMGNA_00080: hypothetical protein |
Gene: RUMLAC_00162: hypothetical protein |
hypothetical protein |
| CRON 4. | |||||||||||||||
| COG4277 |
Gene: BACPEC_02111: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Blautia hansenii DSM 20583 Site: position = 77 score = 4.79224 sequence = CAGAACGTTTGTTCTT Gene: BLAHAN_02424: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Bryantella formatexigens DSM 14469 Site: position = -123 score = 5.10156 sequence = TCGAACATAAGTTCTA Site: position = -98 score = 4.91374 sequence = CAGAACTTATGTTCTT Gene: BRYFOR_02389: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -88 score = 5.06202 sequence = AAGAACAAATGTTCTG Site: position = -29 score = 5.51507 sequence = ACAAACATATGTTCGA Gene: Cbac1_010100001245: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Clostridium bolteae ATCC BAA-613 Site: position = -8 score = 5.19055 sequence = AAGAACAAATGTTCTT Site: position = 50 score = 4.7444 sequence = GCAAACATACGTTCTG Gene: CLOBOL_04661: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Clostridium nexile DSM 1787 Site: position = -67 score = 4.6056 sequence = GCAAACATCTGTTCTG Gene: CLONEX_00280: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Clostridium scindens ATCC 35704 Site: position = -66 score = 5.38063 sequence = AAGAACATATGTTTGT Site: position = -37 score = 5.11085 sequence = ACAAACGTATGTTCTT Gene: CLOSCI_01206: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Dorea formicigenerans ATCC 27755 Site: position = -71 score = 5.32498 sequence = TCGAACAAATGTTCTT Site: position = -45 score = 4.6056 sequence = CAGAACAGATGTTTGC Gene: DORFOR_00795: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Dorea longicatena DSM 13814 Site: position = -58 score = 5.0552 sequence = AAGAACGAATGTTCGA Site: position = -27 score = 4.74537 sequence = AAGAACACTTGTTTGT Gene: DORLON_02750: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Eubacterium eligens ATCC 27750 Site: position = -8 score = 5.08016 sequence = TCGAACAAATGTTTTA Site: position = 10 score = 4.68905 sequence = ATGAACACATGTTCGA Gene: EUBELI_20063: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Eubacterium rectale ATCC 33656 Site: position = -55 score = 4.70916 sequence = CCGAACATATGTTGTA Site: position = -35 score = 4.86856 sequence = GCAAACAGATGTTCGA Gene: EUBREC_2296: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Roseburia intestinalis L1-82 Site: position = -149 score = 5.20815 sequence = TCGAACATATTTTCGT Gene: ROSINTL182_04655: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Ruminococcus gnavus ATCC 29149 Site: position = -62 score = 5.01418 sequence = GCAAACATATGTTCTG Site: position = -30 score = 5.21221 sequence = AAGAACATATGTTCTG Gene: RUMGNA_00361: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
*
Ruminococcus lactaris ATCC 29176 Site: position = -59 score = 4.60771 sequence = GAGAACGTTTGTTCTA Gene: RUMLAC_02126: Predicted DNA-binding protein with the Helix-hairpin-helix motif |
Predicted DNA-binding protein with the Helix-hairpin-helix motif |
| BACPEC_02112 |
Gene: BACPEC_02112: Uracil-DNA glycosylase, family 1 |
Gene: BLAHAN_02426: Uracil-DNA glycosylase, family 1 |
Gene: BRYFOR_02390: Uracil-DNA glycosylase, family 1 |
Gene: Cbac1_010100001240: Uracil-DNA glycosylase, family 1 |
Gene: CLOBOL_04660: Uracil-DNA glycosylase, family 1 |
Gene: CLONEX_00279: Uracil-DNA glycosylase, family 1 |
Gene: CLOSCI_01207: Uracil-DNA glycosylase, family 1 |
Gene: DORFOR_00794: Uracil-DNA glycosylase, family 1 |
Gene: DORLON_02749: Uracil-DNA glycosylase, family 1 |
Gene: EUBELI_20062: Uracil-DNA glycosylase, family 1 |
Gene: EUBREC_2295: Uracil-DNA glycosylase, family 1 |
Gene: ROSINTL182_04656: Uracil-DNA glycosylase, family 1 |
Gene: RUMGNA_00360: Uracil-DNA glycosylase, family 1 |
Gene: RUMLAC_02127: Uracil-DNA glycosylase, family 1 |
Uracil-DNA glycosylase, family 1 |
| CRON 5. | |||||||||||||||
| PF01476 |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -115 score = 4.66647 sequence = CAGAAAATTTGTTCGG Site: position = -77 score = 4.92541 sequence = ACAAACGAATGTTTGA Gene: BACPEC_00340: Peptidoglycan-binding lysin domain |
|
*
Bryantella formatexigens DSM 14469 Site: position = -186 score = 4.98282 sequence = TCGAAAATTTGTTCGA Site: position = -160 score = 4.84352 sequence = ACAAACATCTGTTCTG Gene: BRYFOR_04038: Peptidoglycan-binding lysin domain |
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -160 score = 5.10191 sequence = ACAAACATTTGTTCTG Site: position = -122 score = 4.53385 sequence = AAGAACAGACGTTCTG Gene: CLOBOL_03827: Peptidoglycan-binding lysin domain |
*
Clostridium nexile DSM 1787 Site: position = -126 score = 4.99858 sequence = TAGAAAATATGTTCGT Site: position = -90 score = 5.23044 sequence = ACAAACATTTGTTCTT Site: position = -57 score = 4.86301 sequence = AAGAACAGTTGTTCGG Gene: CLONEX_01663: Peptidoglycan-binding lysin domain |
*
Clostridium scindens ATCC 35704 Site: position = -141 score = 4.92344 sequence = TAGAAAATATGTTCGA Site: position = -104 score = 4.76021 sequence = ACAAACATGCGTTCGA Site: position = -56 score = 4.82284 sequence = ACAAACAAATGTTTTC Gene: CLOSCI_00492: Peptidoglycan-binding lysin domain |
|
|
|
*
Eubacterium rectale ATCC 33656 Site: position = -75 score = 4.7061 sequence = CCGAAATTTTGTTCGT Site: position = -49 score = 4.94491 sequence = ACAAACGATTGTTCGA Site: position = -8 score = 4.97661 sequence = ACAAACACATGTTCGG Gene: EUBREC_1702: Peptidoglycan-binding lysin domain |
|
*
Ruminococcus gnavus ATCC 29149 Site: position = -89 score = 4.98232 sequence = ACAAACATACGTTCTG Site: position = -51 score = 5.07096 sequence = AAGAACGTATGTTCTT Gene: RUMGNA_01921: Peptidoglycan-binding lysin domain |
*
Ruminococcus lactaris ATCC 29176 Site: position = -118 score = 4.97023 sequence = GCGAAAATATGTTCGA Site: position = -81 score = 5.05309 sequence = ACAAACATCTGTTCGG Site: position = -40 score = 4.53198 sequence = ATGAACATACGTTCTC Gene: RUMLAC_00444: Peptidoglycan-binding lysin domain |
Peptidoglycan-binding lysin domain |
| CRON 6. | |||||||||||||||
| DORFOR_01559 |
|
|
|
|
|
|
|
*
Dorea formicigenerans ATCC 27755 Site: position = -168 score = 4.87005 sequence = TAGAAAATATGTTCGG Site: position = -128 score = 4.82777 sequence = CCAAACAACTGTTCGA Site: position = -100 score = 5.23608 sequence = ACGAACAAAAGTTCGA Gene: DORFOR_01559: hypothetical protein |
|
|
|
*
Roseburia intestinalis L1-82 Site: position = -81 score = 5.2021 sequence = ACAAACAAATGTTCGC Site: position = -47 score = 4.55559 sequence = GCAAACAGTTGTTCGC Gene: ROSINTL182_04118: hypothetical protein |
|
|
hypothetical protein |
| CRON 7. | |||||||||||||||
| GNAT |
|
|
|
*
Clostridiales bacterium 1_7_47_FAA Site: position = -74 score = 5.19055 sequence = AAGAACAAATGTTCTT Gene: Cbac1_010100017959: GCN5-related N-acetyltransferase |
*
Clostridium bolteae ATCC BAA-613 Site: position = -8 score = 5.10191 sequence = ACAAACAAATGTTCTG Gene: CLOBOL_06773: GCN5-related N-acetyltransferase |
|
|
|
|
|
|
|
|
|
GCN5-related N-acetyltransferase |
| COG4422 |
|
|
|
Gene: Cbac1_010100017964: Bacteriophage protein gp37 |
Gene: CLOBOL_06771: Bacteriophage protein gp37 |
|
|
|
|
|
|
|
|
|
Bacteriophage protein gp37 |
| CRON 8. | |||||||||||||||
| PS51257 |
|
|
|
*
Clostridiales bacterium 1_7_47_FAA Site: position = -43 score = 5.11633 sequence = ACGAACATATGTTCCT Gene: Cbac1_010100026399: hypothetical protein |
*
Clostridium bolteae ATCC BAA-613 Site: position = -34 score = 5.13707 sequence = TAGAACATATGTTCTG Gene: CLOBOL_04045: hypothetical protein |
|
|
|
|
|
|
|
|
|
hypothetical protein |
| unuC2 |
|
|
|
Gene: Cbac1_010100026404: DNA polymerase V involved in DNA-repair |
Gene: CLOBOL_04044: DNA polymerase V involved in DNA-repair |
|
|
|
|
|
|
|
|
|
DNA polymerase V involved in DNA-repair |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |