Regulog Zur2 - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By trascription factor - Zur
By taxonomy - Various betaproteobacteria
By TF family - FUR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Thiobacillus denitrificans
Methylobacillus flagellatus KT
Methylophilales bacterium HTCC2181
Methylotenera mobilis JLW8
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Chromobacterium violaceum ATCC 12472	5	1
Laribacter hongkongensis HLHK9	6	1
Neisseria meningitidis MC58	4	3
Azoarcus sp. EbN1
Dechloromonas aromatica RCB
Thauera sp. MZ1T

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
zur2	Thiobacillus denitrificans	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	* Chromobacterium violaceum ATCC 12472 Site: position = -137 score = 6.18878 sequence = GCGATGTTATACAGTAACATTAT Gene: CV3068: Zinc uptake regulation protein Zur	* Laribacter hongkongensis HLHK9 Site: position = -47 score = 5.56123 sequence = GTTACGGCATAACATAACGAAAT Gene: LHK_01344: Zinc uptake regulation protein Zur	Neisseria meningitidis MC58 Gene: NMB1266: Zinc uptake regulation protein Zur	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Zinc uptake regulation protein Zur
yciC	Thiobacillus denitrificans	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Chromobacterium violaceum ATCC 12472 Gene: CV3067: Putative zinc chaperone, COG0523 family	Laribacter hongkongensis HLHK9 Gene: LHK_01345: Putative zinc chaperone, COG0523 family	Neisseria meningitidis MC58 Gene: NMB1263: Putative zinc chaperone, COG0523 family	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Putative zinc chaperone, COG0523 family
LHK_01346	Thiobacillus denitrificans	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9 Gene: LHK_01346: Hypothetical protein	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Hypothetical protein
znuC	Thiobacillus denitrificans	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Chromobacterium violaceum ATCC 12472 Gene: CV3066: Zinc ABC transporter, ATP-binding protein ZnuC	Laribacter hongkongensis HLHK9 Gene: LHK_01347: Zinc ABC transporter, ATP-binding protein ZnuC	* Neisseria meningitidis MC58 Site: position = -148 score = 5.8021 sequence = CAAACGTTATACAGTATCATATC Gene: NMB0588: Zinc ABC transporter, ATP-binding protein ZnuC	Azoarcus sp. EbN1 Gene: ebA1812: Zinc ABC transporter, ATP-binding protein ZnuC	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_3498: Zinc ABC transporter, ATP-binding protein ZnuC	Zinc ABC transporter, ATP-binding protein ZnuC
znuB	Thiobacillus denitrificans	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Chromobacterium violaceum ATCC 12472 Gene: CV3065: Zinc ABC transporter, inner membrane permease protein ZnuB	Laribacter hongkongensis HLHK9 Gene: LHK_01348: Zinc ABC transporter, inner membrane permease protein ZnuB	Neisseria meningitidis MC58 Gene: NMB0587: Zinc ABC transporter, inner membrane permease protein ZnuB	Azoarcus sp. EbN1 Gene: ebA1813: Zinc ABC transporter, inner membrane permease protein ZnuB	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_3499: Zinc ABC transporter, inner membrane permease protein ZnuB	Zinc ABC transporter, inner membrane permease protein ZnuB
znuA	Thiobacillus denitrificans	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Chromobacterium violaceum ATCC 12472 Gene: CV3064: Zinc ABC transporter, periplasmic-binding protein ZnuA	Laribacter hongkongensis HLHK9 Gene: LHK_01349: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Neisseria meningitidis MC58 Site: position = -49 score = 5.64634 sequence = GGCTTGTTTTACCATAACAGATG Gene: NMB0586: Zinc ABC transporter, periplasmic-binding protein ZnuA	Azoarcus sp. EbN1 Gene: ebA1814: Zinc ABC transporter, periplasmic-binding protein ZnuA	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_3500: Zinc ABC transporter, periplasmic-binding protein ZnuA	Zinc ABC transporter, periplasmic-binding protein ZnuA

CRON 2.
omr	Thiobacillus denitrificans	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	* Neisseria meningitidis MC58 Site: position = -47 score = 6.42966 sequence = GTAATGTTATATAATAACAAACT Gene: NMB0964: Predicted zinc-related TonB-dependent outer membrane transporter	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Predicted zinc-related TonB-dependent outer membrane transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Zur2 - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --