Regulog PaaR - Deinococcus-Thermus
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Phylum: | Deinococcus-Thermus |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By taxonomy - Deinococcus-Thermus
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus deserti VCD115 | ||
| Deinococcus geothermalis DSM 11300 | ||
| Deinococcus radiodurans R1 | ||
| Thermus aquaticus Y51MC23 | 13 | 2 |
| Thermus thermophilus HB27 | 13 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| paaR |
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*
Thermus aquaticus Y51MC23 Site: position = -20 score = 6.41068 sequence = CTAACAAGCGATCGTTAG Gene: TaqDRAFT_5253: Transcriptional regulator of phenylacetic acid degradation, TetR family |
*
Thermus thermophilus HB27 Site: position = -20 score = 6.14488 sequence = CTAACAAACGACCGTTAG Gene: TTC0609: Transcriptional regulator of phenylacetic acid degradation, TetR family |
Transcriptional regulator of phenylacetic acid degradation, TetR family |
| paaA |
Gene: Deide_04560: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: Dgeo_1918: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: DR2386: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: TaqDRAFT_5254: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: TTC0608: Phenylacetate-CoA oxygenase, PaaA subunit |
Phenylacetate-CoA oxygenase, PaaA subunit |
| paaB |
Gene: Deide_04570: Phenylacetate-CoA oxygenase, PaaB subunit |
Gene: Dgeo_1917: Phenylacetate-CoA oxygenase, PaaB subunit |
Gene: DR2385: Phenylacetate-CoA oxygenase, PaaB subunit |
Gene: TaqDRAFT_5255: Phenylacetate-CoA oxygenase, PaaB subunit |
Gene: TTC0607: Phenylacetate-CoA oxygenase, PaaB subunit |
Phenylacetate-CoA oxygenase, PaaB subunit |
| paaC |
Gene: Deide_04580: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: Dgeo_1916: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: DR2384: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: TaqDRAFT_5256: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: TTC0606: Phenylacetate-CoA oxygenase, PaaC subunit |
Phenylacetate-CoA oxygenase, PaaC subunit |
| paaD |
Gene: Deide_04590: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: Dgeo_1915: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: DR2383: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: TaqDRAFT_5257: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: TTC0605: Phenylacetate-CoA oxygenase, PaaD subunit |
Phenylacetate-CoA oxygenase, PaaD subunit |
| paaZ |
Gene: Deide_04600: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: Dgeo_1913: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: DR2381: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: TaqDRAFT_5258: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: TTC0604: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
| CRON 2. | ||||||
| livK |
Gene: Deide_2p00130: Putative branched-chain amino acid ABC transporter, substrate-binding component |
|
Gene: DRA0263: Putative branched-chain amino acid ABC transporter, substrate-binding component |
*
Thermus aquaticus Y51MC23 Site: position = -60 score = 4.7678 sequence = GAAGCAAACGTTAGTTAG Gene: TaqDRAFT_5266: Putative branched-chain amino acid ABC transporter, substrate-binding component |
*
Thermus thermophilus HB27 Site: position = -61 score = 4.93935 sequence = CGAACGGCCGTTAGTTTG Gene: TTC0597: Putative branched-chain amino acid ABC transporter, substrate-binding component |
Putative branched-chain amino acid ABC transporter, substrate-binding component |
| livH |
|
|
|
Gene: TaqDRAFT_5265: Putative branched-chain amino acid ABC transporter, permease component |
Gene: TTC0598: Putative branched-chain amino acid ABC transporter, permease component |
Putative branched-chain amino acid ABC transporter, permease component |
| livF |
|
|
|
Gene: TaqDRAFT_5264: Putative branched-chain amino acid ABC transporter, permease component 2 |
Gene: TTC0599: Putative branched-chain amino acid ABC transporter, permease component 2 |
Putative branched-chain amino acid ABC transporter, permease component 2 |
| livM |
|
|
|
Gene: TaqDRAFT_5263: Putative branched-chain amino acid ABC transporter, ATPase component |
Gene: TTC0600: Putative branched-chain amino acid ABC transporter, ATPase component |
Putative branched-chain amino acid ABC transporter, ATPase component |
| paaI |
Gene: Deide_02060: Phenylacetic acid degradation protein PaaI, thioesterase |
Gene: Dgeo_0297: Phenylacetic acid degradation protein PaaI, thioesterase |
Gene: DR2321: Phenylacetic acid degradation protein PaaI, thioesterase |
Gene: TaqDRAFT_5262: Phenylacetic acid degradation protein PaaI, thioesterase |
Gene: TTC0601: Phenylacetic acid degradation protein PaaI, thioesterase |
Phenylacetic acid degradation protein PaaI, thioesterase |
| paaK |
Gene: Deide_2p00170: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
Gene: Dgeo_2409: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
Gene: DRA0256: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
Gene: TaqDRAFT_5261: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
Gene: TTC0602: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
| paaY |
Gene: Deide_20170: thioesterase superfamily protein |
Gene: Dgeo_2156: thioesterase superfamily protein |
Gene: DR2608: thioesterase superfamily protein |
Gene: TaqDRAFT_5260: thioesterase superfamily protein |
Gene: TTC0603: thioesterase superfamily protein |
thioesterase superfamily protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |