Regulog PaaR - Deinococcus-Thermus

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Phenylacetic acid degradation
Effector:	Phenylacetyl-CoA
Phylum:	Deinococcus-Thermus
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By trascription factor - PaaR
By taxonomy - Deinococcus-Thermus
By TF family - TetR
By effector - Phenylacetyl-CoA
By pathway - Phenylacetic acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Deinococcus deserti VCD115
Deinococcus geothermalis DSM 11300
Deinococcus radiodurans R1
Thermus aquaticus Y51MC23	13	2
Thermus thermophilus HB27	13	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
paaR	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	* Thermus aquaticus Y51MC23 Site: position = -20 score = 6.41068 sequence = CTAACAAGCGATCGTTAG Gene: TaqDRAFT_5253: Transcriptional regulator of phenylacetic acid degradation, TetR family	* Thermus thermophilus HB27 Site: position = -20 score = 6.14488 sequence = CTAACAAACGACCGTTAG Gene: TTC0609: Transcriptional regulator of phenylacetic acid degradation, TetR family	Transcriptional regulator of phenylacetic acid degradation, TetR family
paaA	Deinococcus deserti VCD115 Gene: Deide_04560: Phenylacetate-CoA oxygenase, PaaA subunit	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1918: Phenylacetate-CoA oxygenase, PaaA subunit	Deinococcus radiodurans R1 Gene: DR2386: Phenylacetate-CoA oxygenase, PaaA subunit	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5254: Phenylacetate-CoA oxygenase, PaaA subunit	Thermus thermophilus HB27 Gene: TTC0608: Phenylacetate-CoA oxygenase, PaaA subunit	Phenylacetate-CoA oxygenase, PaaA subunit
paaB	Deinococcus deserti VCD115 Gene: Deide_04570: Phenylacetate-CoA oxygenase, PaaB subunit	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1917: Phenylacetate-CoA oxygenase, PaaB subunit	Deinococcus radiodurans R1 Gene: DR2385: Phenylacetate-CoA oxygenase, PaaB subunit	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5255: Phenylacetate-CoA oxygenase, PaaB subunit	Thermus thermophilus HB27 Gene: TTC0607: Phenylacetate-CoA oxygenase, PaaB subunit	Phenylacetate-CoA oxygenase, PaaB subunit
paaC	Deinococcus deserti VCD115 Gene: Deide_04580: Phenylacetate-CoA oxygenase, PaaC subunit	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1916: Phenylacetate-CoA oxygenase, PaaC subunit	Deinococcus radiodurans R1 Gene: DR2384: Phenylacetate-CoA oxygenase, PaaC subunit	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5256: Phenylacetate-CoA oxygenase, PaaC subunit	Thermus thermophilus HB27 Gene: TTC0606: Phenylacetate-CoA oxygenase, PaaC subunit	Phenylacetate-CoA oxygenase, PaaC subunit
paaD	Deinococcus deserti VCD115 Gene: Deide_04590: Phenylacetate-CoA oxygenase, PaaD subunit	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1915: Phenylacetate-CoA oxygenase, PaaD subunit	Deinococcus radiodurans R1 Gene: DR2383: Phenylacetate-CoA oxygenase, PaaD subunit	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5257: Phenylacetate-CoA oxygenase, PaaD subunit	Thermus thermophilus HB27 Gene: TTC0605: Phenylacetate-CoA oxygenase, PaaD subunit	Phenylacetate-CoA oxygenase, PaaD subunit
paaZ	Deinococcus deserti VCD115 Gene: Deide_04600: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1913: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Deinococcus radiodurans R1 Gene: DR2381: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5258: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Thermus thermophilus HB27 Gene: TTC0604: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ

CRON 2.
livK	Deinococcus deserti VCD115 Gene: Deide_2p00130: Putative branched-chain amino acid ABC transporter, substrate-binding component	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1 Gene: DRA0263: Putative branched-chain amino acid ABC transporter, substrate-binding component	* Thermus aquaticus Y51MC23 Site: position = -60 score = 4.7678 sequence = GAAGCAAACGTTAGTTAG Gene: TaqDRAFT_5266: Putative branched-chain amino acid ABC transporter, substrate-binding component	* Thermus thermophilus HB27 Site: position = -61 score = 4.93935 sequence = CGAACGGCCGTTAGTTTG Gene: TTC0597: Putative branched-chain amino acid ABC transporter, substrate-binding component	Putative branched-chain amino acid ABC transporter, substrate-binding component
livH	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5265: Putative branched-chain amino acid ABC transporter, permease component	Thermus thermophilus HB27 Gene: TTC0598: Putative branched-chain amino acid ABC transporter, permease component	Putative branched-chain amino acid ABC transporter, permease component
livF	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5264: Putative branched-chain amino acid ABC transporter, permease component 2	Thermus thermophilus HB27 Gene: TTC0599: Putative branched-chain amino acid ABC transporter, permease component 2	Putative branched-chain amino acid ABC transporter, permease component 2
livM	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5263: Putative branched-chain amino acid ABC transporter, ATPase component	Thermus thermophilus HB27 Gene: TTC0600: Putative branched-chain amino acid ABC transporter, ATPase component	Putative branched-chain amino acid ABC transporter, ATPase component
paaI	Deinococcus deserti VCD115 Gene: Deide_02060: Phenylacetic acid degradation protein PaaI, thioesterase	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0297: Phenylacetic acid degradation protein PaaI, thioesterase	Deinococcus radiodurans R1 Gene: DR2321: Phenylacetic acid degradation protein PaaI, thioesterase	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5262: Phenylacetic acid degradation protein PaaI, thioesterase	Thermus thermophilus HB27 Gene: TTC0601: Phenylacetic acid degradation protein PaaI, thioesterase	Phenylacetic acid degradation protein PaaI, thioesterase
paaK	Deinococcus deserti VCD115 Gene: Deide_2p00170: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_2409: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Deinococcus radiodurans R1 Gene: DRA0256: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5261: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Thermus thermophilus HB27 Gene: TTC0602: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaY	Deinococcus deserti VCD115 Gene: Deide_20170: thioesterase superfamily protein	Deinococcus geothermalis DSM 11300 Gene: Dgeo_2156: thioesterase superfamily protein	Deinococcus radiodurans R1 Gene: DR2608: thioesterase superfamily protein	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5260: thioesterase superfamily protein	Thermus thermophilus HB27 Gene: TTC0603: thioesterase superfamily protein	thioesterase superfamily protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PaaR - Deinococcus-Thermus

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --