Regulon of PaaR in Thermus aquaticus Y51MC23

Properties
Regulator type:	Transcription factor
TF locus tag:	TaqDRAFT_5253
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Phenylacetic acid degradation
Effector:	Phenylacetyl-CoA
Regulog:	PaaR - Deinococcus-Thermus
Statistics of regulated genes:
- Genes	13
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By trascription factor - PaaR
By taxonomy - Deinococcus-Thermus
By TF family - TetR
By effector - Phenylacetyl-CoA
By pathway - Phenylacetic acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -60 Score: 4.8 Sequence: GAAGCAAACGTTAGTTAG Locus tag: TaqDRAFT_5266 Name: livK Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component Locus tag: TaqDRAFT_5265 Name: livH Funciton: Putative branched-chain amino acid ABC transporter, permease component Locus tag: TaqDRAFT_5264 Name: livF Funciton: Putative branched-chain amino acid ABC transporter, permease component 2 Locus tag: TaqDRAFT_5263 Name: livM Funciton: Putative branched-chain amino acid ABC transporter, ATPase component Locus tag: TaqDRAFT_5262 Name: paaI Funciton: Phenylacetic acid degradation protein PaaI, thioesterase Locus tag: TaqDRAFT_5261 Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) Locus tag: TaqDRAFT_5260 Name: paaY Funciton: thioesterase superfamily protein
	TaqDRAFT_5266	livK	Putative branched-chain amino acid ABC transporter, substrate-binding component
	TaqDRAFT_5265	livH	Putative branched-chain amino acid ABC transporter, permease component
	TaqDRAFT_5264	livF	Putative branched-chain amino acid ABC transporter, permease component 2
	TaqDRAFT_5263	livM	Putative branched-chain amino acid ABC transporter, ATPase component
	TaqDRAFT_5262	paaI	Phenylacetic acid degradation protein PaaI, thioesterase
	TaqDRAFT_5261	paaK	Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
	TaqDRAFT_5260	paaY	thioesterase superfamily protein
Position: -20 Score: 6.4 Sequence: CTAACAAGCGATCGTTAG Locus tag: TaqDRAFT_5253 Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family Locus tag: TaqDRAFT_5254 Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit Locus tag: TaqDRAFT_5255 Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit Locus tag: TaqDRAFT_5256 Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit Locus tag: TaqDRAFT_5257 Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit Locus tag: TaqDRAFT_5258 Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
	TaqDRAFT_5253	paaR	Transcriptional regulator of phenylacetic acid degradation, TetR family
	TaqDRAFT_5254	paaA	Phenylacetate-CoA oxygenase, PaaA subunit
	TaqDRAFT_5255	paaB	Phenylacetate-CoA oxygenase, PaaB subunit
	TaqDRAFT_5256	paaC	Phenylacetate-CoA oxygenase, PaaC subunit
	TaqDRAFT_5257	paaD	Phenylacetate-CoA oxygenase, PaaD subunit
	TaqDRAFT_5258	paaZ	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD