Regulog XylR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	ROK
Regulation mode:	repressor
Biological process:	Xylose utilization
Effector:	Xylose
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By trascription factor - XylR
By taxonomy - Rhizobiales
By TF family - ROK
By effector - Xylose
By pathway - Xylose utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	4	2
Azorhizobium caulinodans ORS 571
Rhizobium etli CFN 42	4	2
Rhizobium leguminosarum bv. viciae 3841	4	2
Rhizobium sp. NGR234	1	1
Sinorhizobium meliloti 1021	4	2
Xanthobacter autotrophicus Py2
Mesorhizobium loti MAFF303099	5	3
Mesorhizobium sp. BNC1	6	3
Bradyrhizobium japonicum USDA 110	4	2
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255
Rhodopseudomonas palustris CGA009
Bartonella quintana str. Toulouse
Brucella melitensis 16M

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
xylB	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4482: Xylulose kinase (EC 2.7.1.17)	Azorhizobium caulinodans ORS 571	Rhizobium etli CFN 42 Gene: RHE_CH03649: Xylulose kinase (EC 2.7.1.17)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4177: Xylulose kinase (EC 2.7.1.17)	Rhizobium sp. NGR234 Gene: NGR_c29490: Xylulose kinase (EC 2.7.1.17)	Sinorhizobium meliloti 1021 Gene: SMc03164: Xylulose kinase (EC 2.7.1.17)	Xanthobacter autotrophicus Py2	* Mesorhizobium loti MAFF303099 Site: position = -44 score = 5.87952 sequence = ATTTTTTCGAGACCCGAAAAAAA Gene: mlr5033: Xylulose kinase (EC 2.7.1.17)	* Mesorhizobium sp. BNC1 Site: position = -72 score = 5.69129 sequence = TTTGTTTCGAGTCTCGAAATAAT Gene: Meso_2819: Xylulose kinase (EC 2.7.1.17)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M Gene: BMEI1386: Xylulose kinase (EC 2.7.1.17)	Xylulose kinase (EC 2.7.1.17)
xylA	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4483: Xylose isomerase (EC 5.3.1.5)	Azorhizobium caulinodans ORS 571	Rhizobium etli CFN 42 Gene: RHE_CH03648: Xylose isomerase (EC 5.3.1.5)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4176: Xylose isomerase (EC 5.3.1.5)	Rhizobium sp. NGR234 Gene: NGR_c29480: Xylose isomerase (EC 5.3.1.5)	Sinorhizobium meliloti 1021 Gene: SMc03163: Xylose isomerase (EC 5.3.1.5)	Xanthobacter autotrophicus Py2	Mesorhizobium loti MAFF303099 Gene: mlr5036: Xylose isomerase (EC 5.3.1.5)	Mesorhizobium sp. BNC1 Gene: Meso_2820: Xylose isomerase (EC 5.3.1.5)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M Gene: BMEI1387: Xylose isomerase (EC 5.3.1.5)	Xylose isomerase (EC 5.3.1.5)

CRON 2.
xylR	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -148 score = 5.3599 sequence = ATTTTCTCGACAGTCGAGAAAAT Gene: Atu3577: Xylose repressor XylR, ROK family	Azorhizobium caulinodans ORS 571	* Rhizobium etli CFN 42 Site: position = -244 score = 4.94179 sequence = ATTTTCTCGACAGTCGAGAAATT Gene: RHE_CH03171: Xylose repressor XylR, ROK family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -144 score = 5.05894 sequence = TTTTTCTCGACAGTCGAGAAATT Gene: RL3623: Xylose repressor XylR, ROK family	Rhizobium sp. NGR234 Gene: NGR_c24210: Xylose repressor XylR, ROK family	* Sinorhizobium meliloti 1021 Site: position = -293 score = 5.47706 sequence = TTTTTCTCGACAGTCGAGAAAAT Gene: SMb20901: Xylose repressor XylR, ROK family	Xanthobacter autotrophicus Py2	* Mesorhizobium loti MAFF303099 Site: position = -125 score = 5.99235 sequence = TTTTTTTCGAGCCTCGGAATAAA Site: position = -209 score = 5.63487 sequence = ATTTTTTCGAGCCTCGAAAAAAC Gene: mlr3714: Xylose repressor XylR, ROK family	* Mesorhizobium sp. BNC1 Site: position = -44 score = 5.81495 sequence = ATTTTTTCGAGCCTCGAAAAAAG Gene: Meso_3115: Xylose repressor XylR, ROK family	* Bradyrhizobium japonicum USDA 110 Site: position = -190 score = 4.98297 sequence = TTTTATTCACACAGCGAAGAAAT Gene: bll2268: Xylose repressor XylR, ROK family	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Xylose repressor XylR, ROK family

CRON 3.
xylF	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -107 score = 5.3599 sequence = ATTTTCTCGACTGTCGAGAAAAT Gene: Atu3576: Xylose ABC transporter, periplasmic xylose-binding protein XylF	Azorhizobium caulinodans ORS 571	* Rhizobium etli CFN 42 Site: position = -104 score = 4.94179 sequence = AATTTCTCGACTGTCGAGAAAAT Gene: RHE_CH03172: Xylose ABC transporter, periplasmic xylose-binding protein XylF	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -106 score = 5.05894 sequence = AATTTCTCGACTGTCGAGAAAAA Gene: RL3624: Xylose ABC transporter, periplasmic xylose-binding protein XylF	* Rhizobium sp. NGR234 Site: position = -126 score = 5.47706 sequence = ATTTTCTCGACTGTCGAGAAAAA Gene: NGR_c24220: Xylose ABC transporter, periplasmic xylose-binding protein XylF	* Sinorhizobium meliloti 1021 Site: position = -115 score = 5.47706 sequence = ATTTTCTCGACTGTCGAGAAAAA Gene: SMb20902: Xylose ABC transporter, periplasmic xylose-binding protein XylF	Xanthobacter autotrophicus Py2	* Mesorhizobium loti MAFF303099 Site: position = -87 score = 5.63487 sequence = GTTTTTTCGAGGCTCGAAAAAAT Site: position = -171 score = 5.99235 sequence = TTTATTCCGAGGCTCGAAAAAAA Gene: mll3713: Xylose ABC transporter, periplasmic xylose-binding protein XylF	* Mesorhizobium sp. BNC1 Site: position = -217 score = 5.81495 sequence = CTTTTTTCGAGGCTCGAAAAAAT Gene: Meso_3114: Xylose ABC transporter, periplasmic xylose-binding protein XylF	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Xylose ABC transporter, periplasmic xylose-binding protein XylF
xylH	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3575: Xylose ABC transporter, permease protein XylH	Azorhizobium caulinodans ORS 571	Rhizobium etli CFN 42 Gene: RHE_CH03173: Xylose ABC transporter, permease protein XylH	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3625: Xylose ABC transporter, permease protein XylH	Rhizobium sp. NGR234 Gene: NGR_c24230: Xylose ABC transporter, permease protein XylH	Sinorhizobium meliloti 1021 Gene: SMb20903: Xylose ABC transporter, permease protein XylH	Xanthobacter autotrophicus Py2	Mesorhizobium loti MAFF303099 Gene: mll3711: Xylose ABC transporter, permease protein XylH	Mesorhizobium sp. BNC1 Gene: Meso_3113: Xylose ABC transporter, permease protein XylH	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Xylose ABC transporter, permease protein XylH
xylG	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3574: Xylose ABC transporter, ATP-binding protein XylG	Azorhizobium caulinodans ORS 571	Rhizobium etli CFN 42 Gene: RHE_CH03174: Xylose ABC transporter, ATP-binding protein XylG	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3626: Xylose ABC transporter, ATP-binding protein XylG	Rhizobium sp. NGR234 Gene: NGR_c24240: Xylose ABC transporter, ATP-binding protein XylG	Sinorhizobium meliloti 1021 Gene: SMb20904: Xylose ABC transporter, ATP-binding protein XylG	Xanthobacter autotrophicus Py2	Mesorhizobium loti MAFF303099 Gene: mll3710: Xylose ABC transporter, ATP-binding protein XylG	Mesorhizobium sp. BNC1 Gene: Meso_3112: Xylose ABC transporter, ATP-binding protein XylG	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Xylose ABC transporter, ATP-binding protein XylG

CRON 4.
xylF2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Rhizobium etli CFN 42 Gene: RHE_PF00217: Xylose ABC transporter, periplasmic xylose-binding protein XylF2	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2448: Xylose ABC transporter, periplasmic xylose-binding protein XylF2	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Mesorhizobium loti MAFF303099 Gene: mlr4966: Xylose ABC transporter, periplasmic xylose-binding protein XylF2	Mesorhizobium sp. BNC1	* Bradyrhizobium japonicum USDA 110 Site: position = -54 score = 4.98297 sequence = ATTTCTTCGCTGTGTGAATAAAA Gene: blr2269: Xylose ABC transporter, periplasmic xylose-binding protein XylF2	Bradyrhizobium sp. BTAi1 Gene: BBta_6155: Xylose ABC transporter, periplasmic xylose-binding protein XylF2	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Xylose ABC transporter, periplasmic xylose-binding protein XylF2
xylG2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Rhizobium etli CFN 42 Gene: RHE_PF00216: D-xylose transport ATP-binding protein XylG2	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2449: D-xylose transport ATP-binding protein XylG2	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Mesorhizobium loti MAFF303099 Gene: mlr4967: D-xylose transport ATP-binding protein XylG2	Mesorhizobium sp. BNC1	Bradyrhizobium japonicum USDA 110 Gene: blr2270: D-xylose transport ATP-binding protein XylG2	Bradyrhizobium sp. BTAi1 Gene: BBta_6154: D-xylose transport ATP-binding protein XylG2	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M	D-xylose transport ATP-binding protein XylG2
xylH2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Rhizobium etli CFN 42 Gene: RHE_PF00215: Xylose ABC transporter, permease protein XylH2	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2450: Xylose ABC transporter, permease protein XylH2	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Mesorhizobium loti MAFF303099 Gene: mlr4968: Xylose ABC transporter, permease protein XylH2	Mesorhizobium sp. BNC1	Bradyrhizobium japonicum USDA 110 Gene: blr2271: Xylose ABC transporter, permease protein XylH2	Bradyrhizobium sp. BTAi1 Gene: BBta_6153: Xylose ABC transporter, permease protein XylH2	Nitrobacter winogradskyi Nb-255	Rhodopseudomonas palustris CGA009	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Xylose ABC transporter, permease protein XylH2

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog XylR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --