Regulog LexA - Caulobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 47 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Caulobacterales
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Statistics of regulated genes
Genome	Genes	Operons
Caulobacter crescentus CB15	15	12
Caulobacter segnis ATCC 21756	12	11
Caulobacter sp. K31	13	10
Phenylobacterium zucineum HLK1	13	10

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
PF01078	* Caulobacter crescentus CB15 Site: position = -78 score = 5.41783 sequence = GTTCGTTTTTCGTTC Gene: CC0140: ComM-related protein	* Caulobacter segnis ATCC 21756 Site: position = -78 score = 5.41783 sequence = GTTCGTTTTTCGTTC Gene: Cseg_4018: ComM-related protein	* Caulobacter sp. K31 Site: position = -79 score = 5.41783 sequence = GTTCGTTTTTCGTTC Gene: Caul_0179: ComM-related protein	* Phenylobacterium zucineum HLK1 Site: position = -80 score = 4.99223 sequence = GTTCTATTTTCGTTC Gene: PHZ_c3480: ComM-related protein	ComM-related protein

CRON 2.
uvrA	* Caulobacter crescentus CB15 Site: position = -93 score = 5.36298 sequence = GTTCGCATCTTGTTC Gene: CC2590: Excinuclease ABC subunit A	* Caulobacter segnis ATCC 21756 Site: position = -93 score = 5.36298 sequence = GTTCGCATCTTGTTC Gene: Cseg_1102: Excinuclease ABC subunit A	* Caulobacter sp. K31 Site: position = -96 score = 5.0041 sequence = GTTCGCACCTTGTTC Gene: Caul_3697: Excinuclease ABC subunit A	* Phenylobacterium zucineum HLK1 Site: position = -114 score = 5.08536 sequence = GTTCGCCTTGCGTTC Gene: PHZ_c1946: Excinuclease ABC subunit A	Excinuclease ABC subunit A

CRON 3.
lexA	* Caulobacter crescentus CB15 Site: position = -2 score = 5.06535 sequence = GTTTGCGGTTTGTTC Gene: CC1902: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Caulobacter segnis ATCC 21756 Site: position = -36 score = 5.06535 sequence = GTTTGCGGTTTGTTC Gene: Cseg_2189: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Caulobacter sp. K31 Site: position = -38 score = 5.06535 sequence = GTTTGCGGTTTGTTC Gene: Caul_2782: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Phenylobacterium zucineum HLK1 Site: position = -31 score = 5.06535 sequence = GTTTGCGCTTTGTTC Gene: PHZ_c1762: SOS-response repressor and protease LexA (EC 3.4.21.88)	SOS-response repressor and protease LexA (EC 3.4.21.88)

CRON 4.
COG5529	* Caulobacter crescentus CB15 Site: position = -101 score = 4.77284 sequence = GTTCCGCTTTCGTTC Gene: CC3711: Conserved hypothetical protein	* Caulobacter segnis ATCC 21756 Site: position = -53 score = 4.77284 sequence = GTTCCGCTTTCGTTC Gene: Cseg_4159: Conserved hypothetical protein	* Caulobacter sp. K31 Site: position = -53 score = 4.63336 sequence = GTTCTATCTTCGTTC Gene: Caul_5071: Conserved hypothetical protein	* Phenylobacterium zucineum HLK1 Site: position = -41 score = 5.07451 sequence = GTTCTCTCTTCGTTC Gene: PHZ_c3424: Conserved hypothetical protein	Conserved hypothetical protein

CRON 5.
nth	* Caulobacter crescentus CB15 Site: position = -32 score = 5.03143 sequence = GTTCTTGTTATGTTC Gene: CC2272: Endonuclease III (EC 4.2.99.18)	* Caulobacter segnis ATCC 21756 Site: position = -32 score = 5.32333 sequence = GTTCCCATTATGTTC Gene: Cseg_2927: Endonuclease III (EC 4.2.99.18)	* Caulobacter sp. K31 Site: position = -31 score = 5.24344 sequence = GTTCTCGTTACGTTC Gene: Caul_1412: Endonuclease III (EC 4.2.99.18)	Phenylobacterium zucineum HLK1	Endonuclease III (EC 4.2.99.18)

CRON 6.
yoaA	* Caulobacter crescentus CB15 Site: position = -42 score = 4.94015 sequence = GTTCCCATTCTGTTT Gene: CC2038: DinG family ATP-dependent helicase YoaA	* Caulobacter segnis ATCC 21756 Site: position = -41 score = 4.94015 sequence = GTTCCCTTTCTGTTT Gene: Cseg_1391: DinG family ATP-dependent helicase YoaA	Caulobacter sp. K31 Gene: Caul_1456: DinG family ATP-dependent helicase YoaA	* Phenylobacterium zucineum HLK1 Site: position = -42 score = 5.15046 sequence = GTTCCCCTTCCGTTC Gene: PHZ_c2755: DinG family ATP-dependent helicase YoaA	DinG family ATP-dependent helicase YoaA

CRON 7.
recA	* Caulobacter crescentus CB15 Site: position = -122 score = 1.84138 sequence = GAACATCTTGCGAAC Gene: CC1087: Recombinase A	* Caulobacter segnis ATCC 21756 Site: position = -122 score = 1.84138 sequence = GAACATCTTGCGAAC Gene: Cseg_1175: Recombinase A	* Caulobacter sp. K31 Site: position = -111 score = 0.514141 sequence = GAACATGGAACAAAC Gene: Caul_1392: Recombinase A	* Phenylobacterium zucineum HLK1 Site: position = -86 score = 1.07561 sequence = GAACAAAGGAGGTAC Gene: PHZ_c0985: Recombinase A	Recombinase A

CRON 8.
recN	* Caulobacter crescentus CB15 Site: position = -62 score = 5.23265 sequence = GATCCCGTTTCGTTC Gene: CC1983: DNA repair protein RecN	* Caulobacter segnis ATCC 21756 Site: position = -62 score = 5.23265 sequence = GATCCCGTTTCGTTC Gene: Cseg_1444: DNA repair protein RecN	Caulobacter sp. K31 Gene: Caul_3099: DNA repair protein RecN	Phenylobacterium zucineum HLK1 Gene: PHZ_c2310: DNA repair protein RecN	DNA repair protein RecN

CRON 9.
lhr	* Caulobacter crescentus CB15 Site: position = -32 score = -0.931953 sequence = AAACAGAAAGGGAAC Gene: CC2040: ATP-dependent RNA helicase, DEAD/DEAH family	* Caulobacter segnis ATCC 21756 Site: position = -32 score = -0.931953 sequence = AAACAGAAAGGGAAC Gene: Cseg_1390: ATP-dependent RNA helicase, DEAD/DEAH family	* Caulobacter sp. K31 Site: position = -33 score = -0.0196649 sequence = AAACGGAACGGGAAC Gene: Caul_1454: ATP-dependent RNA helicase, DEAD/DEAH family	* Phenylobacterium zucineum HLK1 Site: position = -32 score = 0.995684 sequence = AAACGAACCGCGAAC Gene: PHZ_c2761: ATP-dependent RNA helicase, DEAD/DEAH family	ATP-dependent RNA helicase, DEAD/DEAH family
PF00149	Caulobacter crescentus CB15 Gene: CC2041: Conserved hypothetical protein	Caulobacter segnis ATCC 21756 Gene: Cseg_1389: Conserved hypothetical protein	Caulobacter sp. K31 Gene: Caul_1453: Conserved hypothetical protein	Phenylobacterium zucineum HLK1 Gene: PHZ_c2762: Conserved hypothetical protein	Conserved hypothetical protein

CRON 10.
dnaE	* Caulobacter crescentus CB15 Site: position = -155 score = -0.214361 sequence = GAACAAAACAAGAAA Site: position = -173 score = 0.0689216 sequence = GAACAAAACCGGAAT Gene: CC1926: DNA polymerase III alpha subunit (EC 2.7.7.7)	* Caulobacter segnis ATCC 21756 Site: position = -143 score = -0.214361 sequence = GAACAAAACAAGAAA Site: position = -161 score = 0.0689216 sequence = GAACAAAACCGGAAT Gene: Cseg_2214: DNA polymerase III alpha subunit (EC 2.7.7.7)	* Caulobacter sp. K31 Site: position = -144 score = -0.461016 sequence = GAACAAACAGGCAAC Site: position = -162 score = -0.0278367 sequence = GAACAAAAGTGGAAT Gene: Caul_2808: DNA polymerase III alpha subunit (EC 2.7.7.7)	* Phenylobacterium zucineum HLK1 Site: position = -205 score = 0.105097 sequence = GAACAAAAGGCGAAT Site: position = -188 score = 0.951787 sequence = GAACGAACAAGGAAC Gene: PHZ_c1782: DNA polymerase III alpha subunit (EC 2.7.7.7)	DNA polymerase III alpha subunit (EC 2.7.7.7)

CRON 11.
imuA	* Caulobacter crescentus CB15 Site: position = -81 score = 0.355348 sequence = GAACAAAAGTGGAAC Gene: CC3213: Predicted RecA/RadA recombinase	Caulobacter segnis ATCC 21756	* Caulobacter sp. K31 Site: position = -40 score = 0.355348 sequence = GAACAAAAGTGGAAC Gene: Caul_4463: Predicted RecA/RadA recombinase	* Phenylobacterium zucineum HLK1 Site: position = -34 score = 0.732037 sequence = GAACGGAAGTGGAAC Gene: PHZ_c3266: Predicted RecA/RadA recombinase	Predicted RecA/RadA recombinase
imuB	Caulobacter crescentus CB15 Gene: CC3212: DNA polymerase-like protein PA0670	Caulobacter segnis ATCC 21756 Gene: Cseg_0708: DNA polymerase-like protein PA0670	Caulobacter sp. K31 Gene: Caul_4462: DNA polymerase-like protein PA0670	Phenylobacterium zucineum HLK1 Gene: PHZ_c3267: DNA polymerase-like protein PA0670	DNA polymerase-like protein PA0670
dnaE2	Caulobacter crescentus CB15 Gene: CC3211: DNA polymerase III alpha subunit (EC 2.7.7.7)	Caulobacter segnis ATCC 21756 Gene: Cseg_0709: DNA polymerase III alpha subunit (EC 2.7.7.7)	Caulobacter sp. K31 Gene: Caul_4461: DNA polymerase III alpha subunit (EC 2.7.7.7)	Phenylobacterium zucineum HLK1 Gene: PHZ_c3268: DNA polymerase III alpha subunit (EC 2.7.7.7)	DNA polymerase III alpha subunit (EC 2.7.7.7)

CRON 12.
PF06319	* Caulobacter crescentus CB15 Site: position = -28 score = 0.986576 sequence = GAACAAAGCTGGAAC Gene: CC3467: Conserved hypothetical protein	* Caulobacter segnis ATCC 21756 Site: position = -28 score = 0.986576 sequence = GAACAAAGCTGGAAC Gene: Cseg_0204: Conserved hypothetical protein	* Caulobacter sp. K31 Site: position = -26 score = 0.986576 sequence = GAACAAAGCTGGAAC Gene: Caul_4208: Conserved hypothetical protein	* Phenylobacterium zucineum HLK1 Site: position = -26 score = 0.764133 sequence = GAACGGAGGCGGAAC Gene: PHZ_c0224: Conserved hypothetical protein	Conserved hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LexA - Caulobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --