Regulog LexA - Caulobacterales
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Caulobacterales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 15 | 12 |
| Caulobacter segnis ATCC 21756 | 12 | 11 |
| Caulobacter sp. K31 | 13 | 10 |
| Phenylobacterium zucineum HLK1 | 13 | 10 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| PF01078 |
*
Caulobacter crescentus CB15 Site: position = -78 score = 5.41783 sequence = GTTCGTTTTTCGTTC Gene: CC0140: ComM-related protein |
*
Caulobacter segnis ATCC 21756 Site: position = -78 score = 5.41783 sequence = GTTCGTTTTTCGTTC Gene: Cseg_4018: ComM-related protein |
*
Caulobacter sp. K31 Site: position = -79 score = 5.41783 sequence = GTTCGTTTTTCGTTC Gene: Caul_0179: ComM-related protein |
*
Phenylobacterium zucineum HLK1 Site: position = -80 score = 4.99223 sequence = GTTCTATTTTCGTTC Gene: PHZ_c3480: ComM-related protein |
ComM-related protein |
| CRON 2. | |||||
| uvrA |
*
Caulobacter crescentus CB15 Site: position = -93 score = 5.36298 sequence = GTTCGCATCTTGTTC Gene: CC2590: Excinuclease ABC subunit A |
*
Caulobacter segnis ATCC 21756 Site: position = -93 score = 5.36298 sequence = GTTCGCATCTTGTTC Gene: Cseg_1102: Excinuclease ABC subunit A |
*
Caulobacter sp. K31 Site: position = -96 score = 5.0041 sequence = GTTCGCACCTTGTTC Gene: Caul_3697: Excinuclease ABC subunit A |
*
Phenylobacterium zucineum HLK1 Site: position = -114 score = 5.08536 sequence = GTTCGCCTTGCGTTC Gene: PHZ_c1946: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 3. | |||||
| lexA |
*
Caulobacter crescentus CB15 Site: position = -2 score = 5.06535 sequence = GTTTGCGGTTTGTTC Gene: CC1902: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Caulobacter segnis ATCC 21756 Site: position = -36 score = 5.06535 sequence = GTTTGCGGTTTGTTC Gene: Cseg_2189: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Caulobacter sp. K31 Site: position = -38 score = 5.06535 sequence = GTTTGCGGTTTGTTC Gene: Caul_2782: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Phenylobacterium zucineum HLK1 Site: position = -31 score = 5.06535 sequence = GTTTGCGCTTTGTTC Gene: PHZ_c1762: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 4. | |||||
| COG5529 |
*
Caulobacter crescentus CB15 Site: position = -101 score = 4.77284 sequence = GTTCCGCTTTCGTTC Gene: CC3711: Conserved hypothetical protein |
*
Caulobacter segnis ATCC 21756 Site: position = -53 score = 4.77284 sequence = GTTCCGCTTTCGTTC Gene: Cseg_4159: Conserved hypothetical protein |
*
Caulobacter sp. K31 Site: position = -53 score = 4.63336 sequence = GTTCTATCTTCGTTC Gene: Caul_5071: Conserved hypothetical protein |
*
Phenylobacterium zucineum HLK1 Site: position = -41 score = 5.07451 sequence = GTTCTCTCTTCGTTC Gene: PHZ_c3424: Conserved hypothetical protein |
Conserved hypothetical protein |
| CRON 5. | |||||
| nth |
*
Caulobacter crescentus CB15 Site: position = -32 score = 5.03143 sequence = GTTCTTGTTATGTTC Gene: CC2272: Endonuclease III (EC 4.2.99.18) |
*
Caulobacter segnis ATCC 21756 Site: position = -32 score = 5.32333 sequence = GTTCCCATTATGTTC Gene: Cseg_2927: Endonuclease III (EC 4.2.99.18) |
*
Caulobacter sp. K31 Site: position = -31 score = 5.24344 sequence = GTTCTCGTTACGTTC Gene: Caul_1412: Endonuclease III (EC 4.2.99.18) |
|
Endonuclease III (EC 4.2.99.18) |
| CRON 6. | |||||
| yoaA |
*
Caulobacter crescentus CB15 Site: position = -42 score = 4.94015 sequence = GTTCCCATTCTGTTT Gene: CC2038: DinG family ATP-dependent helicase YoaA |
*
Caulobacter segnis ATCC 21756 Site: position = -41 score = 4.94015 sequence = GTTCCCTTTCTGTTT Gene: Cseg_1391: DinG family ATP-dependent helicase YoaA |
Gene: Caul_1456: DinG family ATP-dependent helicase YoaA |
*
Phenylobacterium zucineum HLK1 Site: position = -42 score = 5.15046 sequence = GTTCCCCTTCCGTTC Gene: PHZ_c2755: DinG family ATP-dependent helicase YoaA |
DinG family ATP-dependent helicase YoaA |
| CRON 7. | |||||
| recA |
*
Caulobacter crescentus CB15 Site: position = -122 score = 1.84138 sequence = GAACATCTTGCGAAC Gene: CC1087: Recombinase A |
*
Caulobacter segnis ATCC 21756 Site: position = -122 score = 1.84138 sequence = GAACATCTTGCGAAC Gene: Cseg_1175: Recombinase A |
*
Caulobacter sp. K31 Site: position = -111 score = 0.514141 sequence = GAACATGGAACAAAC Gene: Caul_1392: Recombinase A |
*
Phenylobacterium zucineum HLK1 Site: position = -86 score = 1.07561 sequence = GAACAAAGGAGGTAC Gene: PHZ_c0985: Recombinase A |
Recombinase A |
| CRON 8. | |||||
| recN |
*
Caulobacter crescentus CB15 Site: position = -62 score = 5.23265 sequence = GATCCCGTTTCGTTC Gene: CC1983: DNA repair protein RecN |
*
Caulobacter segnis ATCC 21756 Site: position = -62 score = 5.23265 sequence = GATCCCGTTTCGTTC Gene: Cseg_1444: DNA repair protein RecN |
Gene: Caul_3099: DNA repair protein RecN |
Gene: PHZ_c2310: DNA repair protein RecN |
DNA repair protein RecN |
| CRON 9. | |||||
| lhr |
*
Caulobacter crescentus CB15 Site: position = -32 score = -0.931953 sequence = AAACAGAAAGGGAAC Gene: CC2040: ATP-dependent RNA helicase, DEAD/DEAH family |
*
Caulobacter segnis ATCC 21756 Site: position = -32 score = -0.931953 sequence = AAACAGAAAGGGAAC Gene: Cseg_1390: ATP-dependent RNA helicase, DEAD/DEAH family |
*
Caulobacter sp. K31 Site: position = -33 score = -0.0196649 sequence = AAACGGAACGGGAAC Gene: Caul_1454: ATP-dependent RNA helicase, DEAD/DEAH family |
*
Phenylobacterium zucineum HLK1 Site: position = -32 score = 0.995684 sequence = AAACGAACCGCGAAC Gene: PHZ_c2761: ATP-dependent RNA helicase, DEAD/DEAH family |
ATP-dependent RNA helicase, DEAD/DEAH family |
| PF00149 |
Gene: CC2041: Conserved hypothetical protein |
Gene: Cseg_1389: Conserved hypothetical protein |
Gene: Caul_1453: Conserved hypothetical protein |
Gene: PHZ_c2762: Conserved hypothetical protein |
Conserved hypothetical protein |
| CRON 10. | |||||
| dnaE |
*
Caulobacter crescentus CB15 Site: position = -155 score = -0.214361 sequence = GAACAAAACAAGAAA Site: position = -173 score = 0.0689216 sequence = GAACAAAACCGGAAT Gene: CC1926: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Caulobacter segnis ATCC 21756 Site: position = -143 score = -0.214361 sequence = GAACAAAACAAGAAA Site: position = -161 score = 0.0689216 sequence = GAACAAAACCGGAAT Gene: Cseg_2214: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Caulobacter sp. K31 Site: position = -144 score = -0.461016 sequence = GAACAAACAGGCAAC Site: position = -162 score = -0.0278367 sequence = GAACAAAAGTGGAAT Gene: Caul_2808: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Phenylobacterium zucineum HLK1 Site: position = -205 score = 0.105097 sequence = GAACAAAAGGCGAAT Site: position = -188 score = 0.951787 sequence = GAACGAACAAGGAAC Gene: PHZ_c1782: DNA polymerase III alpha subunit (EC 2.7.7.7) |
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 11. | |||||
| imuA |
*
Caulobacter crescentus CB15 Site: position = -81 score = 0.355348 sequence = GAACAAAAGTGGAAC Gene: CC3213: Predicted RecA/RadA recombinase |
|
*
Caulobacter sp. K31 Site: position = -40 score = 0.355348 sequence = GAACAAAAGTGGAAC Gene: Caul_4463: Predicted RecA/RadA recombinase |
*
Phenylobacterium zucineum HLK1 Site: position = -34 score = 0.732037 sequence = GAACGGAAGTGGAAC Gene: PHZ_c3266: Predicted RecA/RadA recombinase |
Predicted RecA/RadA recombinase |
| imuB |
Gene: CC3212: DNA polymerase-like protein PA0670 |
Gene: Cseg_0708: DNA polymerase-like protein PA0670 |
Gene: Caul_4462: DNA polymerase-like protein PA0670 |
Gene: PHZ_c3267: DNA polymerase-like protein PA0670 |
DNA polymerase-like protein PA0670 |
| dnaE2 |
Gene: CC3211: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Cseg_0709: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Caul_4461: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: PHZ_c3268: DNA polymerase III alpha subunit (EC 2.7.7.7) |
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 12. | |||||
| PF06319 |
*
Caulobacter crescentus CB15 Site: position = -28 score = 0.986576 sequence = GAACAAAGCTGGAAC Gene: CC3467: Conserved hypothetical protein |
*
Caulobacter segnis ATCC 21756 Site: position = -28 score = 0.986576 sequence = GAACAAAGCTGGAAC Gene: Cseg_0204: Conserved hypothetical protein |
*
Caulobacter sp. K31 Site: position = -26 score = 0.986576 sequence = GAACAAAGCTGGAAC Gene: Caul_4208: Conserved hypothetical protein |
*
Phenylobacterium zucineum HLK1 Site: position = -26 score = 0.764133 sequence = GAACGGAGGCGGAAC Gene: PHZ_c0224: Conserved hypothetical protein |
Conserved hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |