Regulon of LexA in Caulobacter segnis ATCC 21756
| Regulator type: | Transcription factor |
| TF locus tag: | Cseg_2189 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Caulobacterales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 11 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Caulobacterales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -32
Score: -0.9 Sequence: AAACAGAAAGGGAAC
Locus tag: Cseg_1390
Name: lhr Funciton: ATP-dependent RNA helicase, DEAD/DEAH family
Locus tag: Cseg_1389
Name: PF00149 Funciton: Conserved hypothetical protein |
|||
|
lhr
|
ATP-dependent RNA helicase, DEAD/DEAH family
|
||
|
PF00149
|
Conserved hypothetical protein
|
||
|
Position: -78
Score: 5.4 Sequence: GTTCGTTTTTCGTTC
Locus tag: Cseg_4018
Name: PF01078 Funciton: ComM-related protein |
|||
|
PF01078
|
ComM-related protein
|
||
|
Position: -161
Score: 0.1 Sequence: GAACAAAACCGGAAT
Position: -143
Score: -0.2 Sequence: GAACAAAACAAGAAA
Locus tag: Cseg_2214
Name: dnaE Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
|||
|
dnaE
|
DNA polymerase III alpha subunit (EC 2.7.7.7)
|
||
|
Position: -53
Score: 4.8 Sequence: GTTCCGCTTTCGTTC
Locus tag: Cseg_4159
Name: COG5529 Funciton: Conserved hypothetical protein |
|||
|
COG5529
|
Conserved hypothetical protein
|
||
|
Position: -36
Score: 5.1 Sequence: GTTTGCGGTTTGTTC
Locus tag: Cseg_2189
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
|||
|
lexA
|
SOS-response repressor and protease LexA (EC 3.4.21.88)
|
||
|
Position: -93
Score: 5.4 Sequence: GTTCGCATCTTGTTC
Locus tag: Cseg_1102
Name: uvrA Funciton: Excinuclease ABC subunit A |
|||
|
uvrA
|
Excinuclease ABC subunit A
|
||
|
Position: -32
Score: 5.3 Sequence: GTTCCCATTATGTTC
Locus tag: Cseg_2927
Name: nth Funciton: Endonuclease III (EC 4.2.99.18) |
|||
|
nth
|
Endonuclease III (EC 4.2.99.18)
|
||
|
Position: -62
Score: 5.2 Sequence: GATCCCGTTTCGTTC
Locus tag: Cseg_1444
Name: recN Funciton: DNA repair protein RecN |
|||
|
recN
|
DNA repair protein RecN
|
||
|
Position: -122
Score: 1.8 Sequence: GAACATCTTGCGAAC
Locus tag: Cseg_1175
Name: recA Funciton: Recombinase A |
|||
|
recA
|
Recombinase A
|
||
|
Position: -41
Score: 4.9 Sequence: GTTCCCTTTCTGTTT
Locus tag: Cseg_1391
Name: yoaA Funciton: DinG family ATP-dependent helicase YoaA |
|||
|
yoaA
|
DinG family ATP-dependent helicase YoaA
|
||
|
Position: -28
Score: 1 Sequence: GAACAAAGCTGGAAC
Locus tag: Cseg_0204
Name: PF06319 Funciton: Conserved hypothetical protein |
|||
|
PF06319
|
Conserved hypothetical protein
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |