Regulog GlcC - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Glycolate utilization
Effector:	Glycolate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 21 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - GlcC
By TF family - GntR/Others
By effector - Glycolate
By pathway - Glycolate utilization

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021	7	5
Rhizobium sp. NGR234	3	3
Rhizobium leguminosarum bv. viciae 3841
Rhizobium etli CFN 42
Agrobacterium tumefaciens str. C58 (Cereon)	5	3
Mesorhizobium sp. BNC1	9	3
Mesorhizobium loti MAFF303099	7	3
Brucella melitensis 16M	9	4
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
mlr6914	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	* Mesorhizobium sp. BNC1 Site: position = -119 score = 4.23926 sequence = AACTGGTCAACTTATTTGTCCAATG Gene: Meso_0365: uncharacterized conserved membrane protein	* Mesorhizobium loti MAFF303099 Site: position = -156 score = 5.16946 sequence = AACTGGTCAAATTATTTATCCAATT Gene: mlr6914: uncharacterized conserved membrane protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	uncharacterized conserved membrane protein

CRON 2.
mlr6914	* Sinorhizobium meliloti 1021 Site: position = -130 score = 5.73182 sequence = AAGTGGTCAAATTGATTGTCCACTC Gene: SMc00830: uncharacterized conserved membrane protein	* Rhizobium sp. NGR234 Site: position = -134 score = 6.27747 sequence = AAGTGGTCAAATCGATTGTCCACTT Gene: NGR_c03900: uncharacterized conserved membrane protein	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0663: uncharacterized conserved membrane protein	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	uncharacterized conserved membrane protein

CRON 3.
glcD	* Sinorhizobium meliloti 1021 Site: position = -46 score = 5.83012 sequence = TAGTGGTAAGCAAAAAATACCACTT Gene: SMc00832: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Rhizobium sp. NGR234 Gene: NGR_c03920: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0864: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Rhizobium etli CFN 42 Gene: RHE_CH00808: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -51 score = 5.60924 sequence = AAGTGGTAAAGAAAGAATACCAGTT Gene: Atu0665: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	* Mesorhizobium sp. BNC1 Site: position = -36 score = 4.67904 sequence = AACTGGTAAATAGATTAGACCAGTG Gene: Meso_0364: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	* Mesorhizobium loti MAFF303099 Site: position = -113 score = 4.36085 sequence = CACTGGTAAAAGATTTTGACCAGTG Gene: mlr6916: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	* Brucella melitensis 16M Site: position = -78 score = 7.91699 sequence = AAGTGGTAAAAACGATTTACCACTT Gene: BMEII1064: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1130: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Bradyrhizobium japonicum USDA 110 Gene: bll7543: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Bradyrhizobium sp. BTAi1 Gene: BBta_1662: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2581: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Azorhizobium caulinodans ORS 571 Gene: AZC_0083: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Xanthobacter autotrophicus Py2 Gene: Xaut_1870: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE	Sinorhizobium meliloti 1021 Gene: SMc00833: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Rhizobium sp. NGR234 Gene: NGR_c03930: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0865: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Rhizobium etli CFN 42 Gene: RHE_CH00809: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0666: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Mesorhizobium sp. BNC1 Gene: Meso_0363: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Mesorhizobium loti MAFF303099 Gene: mlr6919: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	2 Brucella melitensis 16M Gene: BMEII1063: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE Gene: BMEII1062: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1131: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Bradyrhizobium japonicum USDA 110 Gene: bll7541: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Bradyrhizobium sp. BTAi1 Gene: BBta_1663: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2580: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Azorhizobium caulinodans ORS 571 Gene: AZC_0082: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Xanthobacter autotrophicus Py2 Gene: Xaut_1869: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF	Sinorhizobium meliloti 1021 Gene: SMc00926: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Rhizobium sp. NGR234 Gene: NGR_c03950: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0866: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Rhizobium etli CFN 42 Gene: RHE_CH00810: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0667: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Mesorhizobium sp. BNC1 Gene: Meso_0361: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Mesorhizobium loti MAFF303099 Gene: mlr6920: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Brucella melitensis 16M Gene: BMEII1061: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1132: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Bradyrhizobium japonicum USDA 110 Gene: bll7540: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Bradyrhizobium sp. BTAi1 Gene: BBta_1664: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2579: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Azorhizobium caulinodans ORS 571 Gene: AZC_0080: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Xanthobacter autotrophicus Py2 Gene: Xaut_1868: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
NGR_c03940	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_c03940: hypothetical protein	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_0362: hypothetical protein	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	hypothetical protein
mlr6918	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr6918: hypothetical protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	hypothetical protein

CRON 4.
glcC	* Sinorhizobium meliloti 1021 Site: position = -73 score = 4.85127 sequence = GAGTGGACAATCAATTTGACCACTT Gene: SMc00829: Glycolate utilization operon transcriptional activator	* Rhizobium sp. NGR234 Site: position = -101 score = 5.07116 sequence = AAGTGGACAATCGATTTGACCACTT Gene: NGR_c03890: Glycolate utilization operon transcriptional activator	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -90 score = 4.94858 sequence = AACTGGATAGAATAATTGACCAGTA Gene: Atu0662: Glycolate utilization operon transcriptional activator	* Mesorhizobium sp. BNC1 Site: position = -58 score = 4.14096 sequence = CATTGGACAAATAAGTTGACCAGTT Gene: Meso_0366: Glycolate utilization operon transcriptional activator	* Mesorhizobium loti MAFF303099 Site: position = -78 score = 4.63039 sequence = AATTGGATAAATAATTTGACCAGTT Gene: mll6911: Glycolate utilization operon transcriptional activator	Brucella melitensis 16M Gene: BMEII1066: Glycolate utilization operon transcriptional activator	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Glycolate utilization operon transcriptional activator
ykgE	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_0367: L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1769: L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE	L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE
ykgF	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_0368: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1768: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
ykgG	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_0369: L-lactate dehydrogenase, hypothetical protein subunit YkgG	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1767: L-lactate dehydrogenase, hypothetical protein subunit YkgG	L-lactate dehydrogenase, hypothetical protein subunit YkgG
lysR	* Sinorhizobium meliloti 1021 Site: position = -178 score = 4.67904 sequence = AAGTGGTATTTTTTGCTTACCACTA Gene: SMc00831: Transcriptional regulator, LysR family, in glycolate utilization operon	Rhizobium sp. NGR234 Gene: NGR_c03910: Transcriptional regulator, LysR family, in glycolate utilization operon	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0863: Transcriptional regulator, LysR family, in glycolate utilization operon	Rhizobium etli CFN 42 Gene: RHE_CH00807: Transcriptional regulator, LysR family, in glycolate utilization operon	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -85 score = 4.85028 sequence = AACTGGTATTCTTTCTTTACCACTT Gene: Atu0664: Transcriptional regulator, LysR family, in glycolate utilization operon	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	* Brucella melitensis 16M Site: position = -111 score = 5.95171 sequence = AAGTGGTAAATCGTTTTTACCACTT Gene: BMEII1065: Transcriptional regulator, LysR family, in glycolate utilization operon	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0084: Transcriptional regulator, LysR family, in glycolate utilization operon	Xanthobacter autotrophicus Py2 Gene: Xaut_1871: Transcriptional regulator, LysR family, in glycolate utilization operon	Transcriptional regulator, LysR family, in glycolate utilization operon
lldD	* Sinorhizobium meliloti 1021 Site: position = -100 score = 4.14096 sequence = GAGAGGTAAGATTTTTTGACCTCTC Gene: SMb20850: L-lactate dehydrogenase (EC 1.1.2.3)	* Rhizobium sp. NGR234 Site: position = -202 score = 4.58173 sequence = AAGAGGTCAATTTTTTTGACCTCTT Gene: NGR_c23940: L-lactate dehydrogenase (EC 1.1.2.3)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3578: L-lactate dehydrogenase (EC 1.1.2.3)	Rhizobium etli CFN 42 Gene: RHE_CH03131: L-lactate dehydrogenase (EC 1.1.2.3)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2318: L-lactate dehydrogenase (EC 1.1.2.3)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll6909: L-lactate dehydrogenase (EC 1.1.2.3)	* Brucella melitensis 16M Site: position = -33 score = 4.58173 sequence = GATTGGTAAAGAAAACTGACCACAA Gene: BMEII0377: L-lactate dehydrogenase (EC 1.1.2.3)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA4320: L-lactate dehydrogenase (EC 1.1.2.3)	Bradyrhizobium japonicum USDA 110 Gene: blr7409: L-lactate dehydrogenase (EC 1.1.2.3)	Bradyrhizobium sp. BTAi1 Gene: BBta_1816: L-lactate dehydrogenase (EC 1.1.2.3)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2267: L-lactate dehydrogenase (EC 1.1.2.3)	Xanthobacter autotrophicus Py2	L-lactate dehydrogenase (EC 1.1.2.3)

CRON 5.
lldP	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	2 Brucella melitensis 16M* Gene: BMEI1233: L-lactate permease Site: position = -171 score = 4.45915 sequence = CTCTGGTAAAGTAAGTTTACCAATC Gene: BMEI1232: L-lactate permease	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_4350: L-lactate permease	L-lactate permease

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GlcC - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --