Regulog GlcC - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Glycolate utilization |
| Effector: | Glycolate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - GlcC
- By TF family - GntR/Others
- By effector - Glycolate
- By pathway - Glycolate utilization
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 7 | 5 |
| Rhizobium sp. NGR234 | 3 | 3 |
| Rhizobium leguminosarum bv. viciae 3841 | ||
| Rhizobium etli CFN 42 | ||
| Agrobacterium tumefaciens str. C58 (Cereon) | 5 | 3 |
| Mesorhizobium sp. BNC1 | 9 | 3 |
| Mesorhizobium loti MAFF303099 | 7 | 3 |
| Brucella melitensis 16M | 9 | 4 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | ||
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| mlr6914 |
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Mesorhizobium sp. BNC1 Site: position = -119 score = 4.23926 sequence = AACTGGTCAACTTATTTGTCCAATG Gene: Meso_0365: uncharacterized conserved membrane protein |
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Mesorhizobium loti MAFF303099 Site: position = -156 score = 5.16946 sequence = AACTGGTCAAATTATTTATCCAATT Gene: mlr6914: uncharacterized conserved membrane protein |
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uncharacterized conserved membrane protein |
| CRON 2. | ||||||||||||||||
| mlr6914 |
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Sinorhizobium meliloti 1021 Site: position = -130 score = 5.73182 sequence = AAGTGGTCAAATTGATTGTCCACTC Gene: SMc00830: uncharacterized conserved membrane protein |
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Rhizobium sp. NGR234 Site: position = -134 score = 6.27747 sequence = AAGTGGTCAAATCGATTGTCCACTT Gene: NGR_c03900: uncharacterized conserved membrane protein |
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Gene: Atu0663: uncharacterized conserved membrane protein |
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uncharacterized conserved membrane protein |
| CRON 3. | ||||||||||||||||
| glcD |
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Sinorhizobium meliloti 1021 Site: position = -46 score = 5.83012 sequence = TAGTGGTAAGCAAAAAATACCACTT Gene: SMc00832: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: NGR_c03920: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: RL0864: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: RHE_CH00808: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -51 score = 5.60924 sequence = AAGTGGTAAAGAAAGAATACCAGTT Gene: Atu0665: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
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Mesorhizobium sp. BNC1 Site: position = -36 score = 4.67904 sequence = AACTGGTAAATAGATTAGACCAGTG Gene: Meso_0364: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
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Mesorhizobium loti MAFF303099 Site: position = -113 score = 4.36085 sequence = CACTGGTAAAAGATTTTGACCAGTG Gene: mlr6916: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
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Brucella melitensis 16M Site: position = -78 score = 7.91699 sequence = AAGTGGTAAAAACGATTTACCACTT Gene: BMEII1064: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
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Gene: RPA1130: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: bll7543: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: BBta_1662: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Nwi_2581: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: AZC_0083: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Xaut_1870: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
| glcE |
Gene: SMc00833: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: NGR_c03930: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: RL0865: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: RHE_CH00809: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: Atu0666: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: Meso_0363: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: mlr6919: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
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Brucella melitensis 16M Gene: BMEII1063: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE Gene: BMEII1062: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
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Gene: RPA1131: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: bll7541: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: BBta_1663: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: Nwi_2580: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: AZC_0082: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: Xaut_1869: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
| glcF |
Gene: SMc00926: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: NGR_c03950: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: RL0866: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: RHE_CH00810: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Atu0667: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Meso_0361: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: mlr6920: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: BMEII1061: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
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Gene: RPA1132: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: bll7540: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: BBta_1664: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Nwi_2579: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: AZC_0080: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Xaut_1868: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
| NGR_c03940 |
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Gene: NGR_c03940: hypothetical protein |
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Gene: Meso_0362: hypothetical protein |
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hypothetical protein |
| mlr6918 |
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Gene: mlr6918: hypothetical protein |
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hypothetical protein |
| CRON 4. | ||||||||||||||||
| glcC |
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Sinorhizobium meliloti 1021 Site: position = -73 score = 4.85127 sequence = GAGTGGACAATCAATTTGACCACTT Gene: SMc00829: Glycolate utilization operon transcriptional activator |
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Rhizobium sp. NGR234 Site: position = -101 score = 5.07116 sequence = AAGTGGACAATCGATTTGACCACTT Gene: NGR_c03890: Glycolate utilization operon transcriptional activator |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -90 score = 4.94858 sequence = AACTGGATAGAATAATTGACCAGTA Gene: Atu0662: Glycolate utilization operon transcriptional activator |
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Mesorhizobium sp. BNC1 Site: position = -58 score = 4.14096 sequence = CATTGGACAAATAAGTTGACCAGTT Gene: Meso_0366: Glycolate utilization operon transcriptional activator |
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Mesorhizobium loti MAFF303099 Site: position = -78 score = 4.63039 sequence = AATTGGATAAATAATTTGACCAGTT Gene: mll6911: Glycolate utilization operon transcriptional activator |
Gene: BMEII1066: Glycolate utilization operon transcriptional activator |
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Glycolate utilization operon transcriptional activator |
| ykgE |
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Gene: Meso_0367: L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE |
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Gene: Xaut_1769: L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE |
L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE |
| ykgF |
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Gene: Meso_0368: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
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Gene: Xaut_1768: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
| ykgG |
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Gene: Meso_0369: L-lactate dehydrogenase, hypothetical protein subunit YkgG |
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Gene: Xaut_1767: L-lactate dehydrogenase, hypothetical protein subunit YkgG |
L-lactate dehydrogenase, hypothetical protein subunit YkgG |
| lysR |
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Sinorhizobium meliloti 1021 Site: position = -178 score = 4.67904 sequence = AAGTGGTATTTTTTGCTTACCACTA Gene: SMc00831: Transcriptional regulator, LysR family, in glycolate utilization operon |
Gene: NGR_c03910: Transcriptional regulator, LysR family, in glycolate utilization operon |
Gene: RL0863: Transcriptional regulator, LysR family, in glycolate utilization operon |
Gene: RHE_CH00807: Transcriptional regulator, LysR family, in glycolate utilization operon |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -85 score = 4.85028 sequence = AACTGGTATTCTTTCTTTACCACTT Gene: Atu0664: Transcriptional regulator, LysR family, in glycolate utilization operon |
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Brucella melitensis 16M Site: position = -111 score = 5.95171 sequence = AAGTGGTAAATCGTTTTTACCACTT Gene: BMEII1065: Transcriptional regulator, LysR family, in glycolate utilization operon |
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Gene: AZC_0084: Transcriptional regulator, LysR family, in glycolate utilization operon |
Gene: Xaut_1871: Transcriptional regulator, LysR family, in glycolate utilization operon |
Transcriptional regulator, LysR family, in glycolate utilization operon |
| lldD |
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Sinorhizobium meliloti 1021 Site: position = -100 score = 4.14096 sequence = GAGAGGTAAGATTTTTTGACCTCTC Gene: SMb20850: L-lactate dehydrogenase (EC 1.1.2.3) |
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Rhizobium sp. NGR234 Site: position = -202 score = 4.58173 sequence = AAGAGGTCAATTTTTTTGACCTCTT Gene: NGR_c23940: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: RL3578: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: RHE_CH03131: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: Atu2318: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: mll6909: L-lactate dehydrogenase (EC 1.1.2.3) |
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Brucella melitensis 16M Site: position = -33 score = 4.58173 sequence = GATTGGTAAAGAAAACTGACCACAA Gene: BMEII0377: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: RPA4320: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: blr7409: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: BBta_1816: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: AZC_2267: L-lactate dehydrogenase (EC 1.1.2.3) |
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L-lactate dehydrogenase (EC 1.1.2.3) |
| CRON 5. | ||||||||||||||||
| lldP |
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*2
Brucella melitensis 16M Gene: BMEI1233: L-lactate permease Site: position = -171 score = 4.45915 sequence = CTCTGGTAAAGTAAGTTTACCAATC Gene: BMEI1232: L-lactate permease |
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Gene: Xaut_4350: L-lactate permease |
L-lactate permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |