Regulog Zur - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Various betaproteobacteria
By trascription factor - Zur
By TF family - FUR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Azoarcus sp. EbN1	5	1
Thauera sp. MZ1T	9	2
Dechloromonas aromatica RCB
Nitrosomonas europaea ATCC 19718	1	1
Nitrosospira multiformis ATCC 25196	3	1
Thiobacillus denitrificans
Chromobacterium violaceum ATCC 12472
Neisseria meningitidis MC58
Laribacter hongkongensis HLHK9
Methylobacillus flagellatus KT	10	3
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
omr	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	* Methylobacillus flagellatus KT Site: position = -11 score = 6.39724 sequence = AATATGCCACAATGTTGCATTAC Gene: Mfla_0708: Predicted zinc-related TonB-dependent outer membrane transporter	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Predicted zinc-related TonB-dependent outer membrane transporter
zip	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_0707: Zinc transporter, ZIP family	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Zinc transporter, ZIP family
PF10986	Azoarcus sp. EbN1	* Thauera sp. MZ1T Site: position = -99 score = 6.36925 sequence = TTGATGCAACATTGTAGCATTAG Gene: Tmz1t_3495: Predicted ABC transport system, substrate-binding protein	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_0706: Predicted ABC transport system, substrate-binding protein	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Predicted ABC transport system, substrate-binding protein
COG1124	Azoarcus sp. EbN1	Thauera sp. MZ1T Gene: Tmz1t_3494: Predicted ABC transport system, ATP-binding protein	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_0705: Predicted ABC transport system, ATP-binding protein	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Predicted ABC transport system, ATP-binding protein
COG0577	Azoarcus sp. EbN1	Thauera sp. MZ1T Gene: Tmz1t_3493: Predicted ABC transport system, permease protein	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_0704: Predicted ABC transport system, permease protein	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Predicted ABC transport system, permease protein
PF11736	Azoarcus sp. EbN1	Thauera sp. MZ1T Gene: Tmz1t_3492: Lipoprotein, putative	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_0703: Lipoprotein, putative	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Lipoprotein, putative

CRON 2.
dksA2	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans Gene: Tbd_2533: DnaK suppressor protein	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	* Methylobacillus flagellatus KT Site: position = -34 score = 7.00683 sequence = AAAATGCAACATTGTTGCATTAT Site: position = -72 score = 6.59421 sequence = TAATTGCAACATAGTTGCATATA Gene: Mfla_1232: DnaK suppressor protein	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	DnaK suppressor protein
yciC2	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans Gene: Tbd_2534: Putative zinc chaperone, COG0523 family	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_1231: Putative zinc chaperone, COG0523 family	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Putative zinc chaperone, COG0523 family
yciC3	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_1230: Putative zinc chaperone, COG0523 family	Methylotenera mobilis JLW8 Gene: Mmol_1305: Putative zinc chaperone, COG0523 family	Methylophilales bacterium HTCC2181	Putative zinc chaperone, COG0523 family

CRON 3.
zur	* Azoarcus sp. EbN1 Site: position = 2 score = 6.76534 sequence = GAAATGCTACAATGTTGCATTAG Gene: ebA1809: Zinc uptake regulation protein Zur	* Thauera sp. MZ1T Site: position = -81 score = 6.50627 sequence = CTAATGCTACAATGTTGCATCAA Gene: Tmz1t_3496: Zinc uptake regulation protein Zur	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718 Gene: NE1722: Zinc uptake regulation protein Zur	* Nitrosospira multiformis ATCC 25196 Site: position = 145 score = 4.93381 sequence = TAAATGCAACTCTGTTGCAAACT Gene: Nmul_A2512: ferric uptake regulator, FUR family	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_1233: Zinc uptake regulation protein Zur	Methylotenera mobilis JLW8 Gene: Mmol_1304: Zinc uptake regulation protein Zur	Methylophilales bacterium HTCC2181	Zinc uptake regulation protein Zur
Tmz1t_3497	Azoarcus sp. EbN1	Thauera sp. MZ1T Gene: Tmz1t_3497: Hypothetical protein	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Hypothetical protein
znuC	Azoarcus sp. EbN1 Gene: ebA1812: Zinc ABC transporter, ATP-binding protein ZnuC	Thauera sp. MZ1T Gene: Tmz1t_3498: Zinc ABC transporter, ATP-binding protein ZnuC	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV3066: Zinc ABC transporter, ATP-binding protein ZnuC	Neisseria meningitidis MC58 Gene: NMB0588: Zinc ABC transporter, ATP-binding protein ZnuC	Laribacter hongkongensis HLHK9 Gene: LHK_01347: Zinc ABC transporter, ATP-binding protein ZnuC	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Zinc ABC transporter, ATP-binding protein ZnuC
znuB	Azoarcus sp. EbN1 Gene: ebA1813: Zinc ABC transporter, inner membrane permease protein ZnuB	Thauera sp. MZ1T Gene: Tmz1t_3499: Zinc ABC transporter, inner membrane permease protein ZnuB	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV3065: Zinc ABC transporter, inner membrane permease protein ZnuB	Neisseria meningitidis MC58 Gene: NMB0587: Zinc ABC transporter, inner membrane permease protein ZnuB	Laribacter hongkongensis HLHK9 Gene: LHK_01348: Zinc ABC transporter, inner membrane permease protein ZnuB	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Zinc ABC transporter, inner membrane permease protein ZnuB
znuA	Azoarcus sp. EbN1 Gene: ebA1814: Zinc ABC transporter, periplasmic-binding protein ZnuA	Thauera sp. MZ1T Gene: Tmz1t_3500: Zinc ABC transporter, periplasmic-binding protein ZnuA	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV3064: Zinc ABC transporter, periplasmic-binding protein ZnuA	Neisseria meningitidis MC58 Gene: NMB0586: Zinc ABC transporter, periplasmic-binding protein ZnuA	Laribacter hongkongensis HLHK9 Gene: LHK_01349: Zinc ABC transporter, periplasmic-binding protein ZnuA	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Zinc ABC transporter, periplasmic-binding protein ZnuA
ebA1811	Azoarcus sp. EbN1 Gene: ebA1811: Hypothetical protein	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Hypothetical protein
Nmul_A2511	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A2511: hypothetical protein	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	hypothetical protein
omr2	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	* Nitrosomonas europaea ATCC 19718 Site: position = -193 score = 6.39209 sequence = TAATTGCAACAATGTTGCGGCTA Site: position = -233 score = 6.59734 sequence = TAATTGCAACATAGTTGCGTTTT Gene: NE1721: Predicted zinc-related TonB-dependent outer membrane transporter	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A2510: Predicted zinc-related TonB-dependent outer membrane transporter	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Predicted zinc-related TonB-dependent outer membrane transporter

CRON 4.
rpmJ2	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58 Gene: NMB0941: 50S ribosomal protein L36 paralog	Laribacter hongkongensis HLHK9	* Methylobacillus flagellatus KT Site: position = -73 score = 6.13483 sequence = AATATGCAACAATGTTGCAATTT Gene: Mfla_1288: 50S ribosomal protein L36 paralog	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	50S ribosomal protein L36 paralog

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Zur - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --