Regulog BirA - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - BirA
- By taxonomy - Pseudomonadaceae
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 5 | 1 |
| Pseudomonas entomophila L48 | 6 | 2 |
| Pseudomonas putida KT2440 | 6 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | 6 | 2 |
| Pseudomonas fluorescens Pf-5 | 6 | 2 |
| Pseudomonas mendocina ymp | 6 | 2 |
| Pseudomonas stutzeri A1501 | 6 | 2 |
| Azotobacter vinelandii AvOP | 5 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PA0490 |
|
|
|
|
|
*
Pseudomonas mendocina ymp Site: position = -107 score = 8.23801 sequence = CTGTCAACC-(14)-GGTTGACGA Gene: Pmen_4089: Permeases of the major facilitator superfamily |
|
|
Permeases of the major facilitator superfamily |
| COG1040 |
Gene: PA0489: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Pseudomonas entomophila L48 Site: position = 5 score = 8.10836 sequence = CTGTCAACC-(15)-GGCTTACAA Gene: PSEEN5122: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Pseudomonas putida KT2440 Site: position = 5 score = 8.5622 sequence = CTGTCAACT-(15)-GGTTTACAA Gene: PP0361: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = 5 score = 8.81229 sequence = CTGTCAACC-(15)-GGTTTACAT Gene: PSPTO0493: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Pseudomonas fluorescens Pf-5 Site: position = 5 score = 8.81229 sequence = CTGTCAACC-(15)-GGTTTACAT Gene: PFL_5694: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
Gene: Pmen_4090: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Pseudomonas stutzeri A1501 Site: position = -21 score = 8.99046 sequence = CTGTCAACC-(14)-GGTTTACAA Gene: PST_3867: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Azotobacter vinelandii AvOP Site: position = -16 score = 8.99046 sequence = CTGTCAACC-(15)-GGTTTACAA Gene: Avin_05970: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
| CRON 2. | |||||||||
| bioB |
*
Pseudomonas aeruginosa PAO1 Site: position = -129 score = 7.4675 sequence = ATGTAGTCC-(14)-GGTTGACAG Gene: PA0500: Biotin synthase (EC 2.8.1.6) |
*
Pseudomonas entomophila L48 Site: position = -127 score = 8.10836 sequence = TTGTAAGCC-(15)-GGTTGACAG Gene: PSEEN5121: Biotin synthase (EC 2.8.1.6) |
*
Pseudomonas putida KT2440 Site: position = -127 score = 8.5622 sequence = TTGTAAACC-(15)-AGTTGACAG Gene: PP0362: Biotin synthase (EC 2.8.1.6) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -128 score = 8.81229 sequence = ATGTAAACC-(15)-GGTTGACAG Gene: PSPTO0494: Biotin synthase (EC 2.8.1.6) |
*
Pseudomonas fluorescens Pf-5 Site: position = -128 score = 8.81229 sequence = ATGTAAACC-(15)-GGTTGACAG Gene: PFL_5693: Biotin synthase (EC 2.8.1.6) |
*
Pseudomonas mendocina ymp Site: position = -119 score = 8.23801 sequence = TCGTCAACC-(14)-GGTTGACAG Gene: Pmen_4088: Biotin synthase (EC 2.8.1.6) |
*
Pseudomonas stutzeri A1501 Site: position = -104 score = 8.99046 sequence = TTGTAAACC-(14)-GGTTGACAG Gene: PST_3866: Biotin synthase (EC 2.8.1.6) |
*
Azotobacter vinelandii AvOP Site: position = -139 score = 8.99046 sequence = TTGTAAACC-(15)-GGTTGACAG Gene: Avin_05980: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
Gene: PA0501: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PSEEN5120: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PP0363: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PSPTO0495: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PFL_5692: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Pmen_4087: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PST_3865: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Avin_05990: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioH |
Gene: PA0502: hypothetical protein |
Gene: PSEEN5119: hypothetical protein |
Gene: PP0364: hypothetical protein |
Gene: PSPTO0496: hypothetical protein |
Gene: PFL_5691: hypothetical protein |
Gene: Pmen_4086: hypothetical protein |
Gene: PST_3864: hypothetical protein |
Gene: Avin_06000: hypothetical protein |
hypothetical protein |
| bioC |
Gene: PA0503: Biotin synthesis protein bioC |
Gene: PSEEN5118: Biotin synthesis protein bioC |
Gene: PP0365: Biotin synthesis protein bioC |
Gene: PSPTO0497: Biotin synthesis protein bioC |
Gene: PFL_5690: Biotin synthesis protein bioC |
Gene: Pmen_4085: Biotin synthesis protein bioC |
Gene: PST_3863: Biotin synthesis protein bioC |
Gene: Avin_06010: Biotin synthesis protein bioC |
Biotin synthesis protein bioC |
| bioD |
Gene: PA0504: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PSEEN5117: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PP0366: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PSPTO0498: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PFL_5689: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Pmen_4084: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PST_3862: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Avin_45930: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |