Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YhgD - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode:
Biological process:
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1 1 1
Bacillus amyloliquefaciens FZB42 2 2
Bacillus cereus ATCC 14579 2 2
Bacillus clausii KSM-K16
Bacillus halodurans C-125 2 1
Bacillus licheniformis DSM 13 2 1
Bacillus pumilus SAFR-032 2 2
Bacillus subtilis subsp. subtilis str. 168 2 1
Geobacillus kaustophilus HTA426 3 3
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yhgD
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -42
score = 5.8216
sequence = TGACTAAAACGTTCAAACGGTCA

Gene: RBAM_010380: Transcriptional regulator, TetR family
*
Bacillus cereus ATCC 14579

Site:
position = -40
score = 6.32857
sequence = TGACTATATTATCCAATTGGTCA

Gene: BC1077: Transcriptional regulator, TetR family
 
Bacillus clausii KSM-K16
*
Bacillus halodurans C-125

Site:
position = -48
score = 6.38973
sequence = TGACCATTTTGTTCATTTGGTCA

Gene: BH2145: Transcriptional regulator, TetR family
*
Bacillus licheniformis DSM 13

Site:
position = -41
score = 6.17567
sequence = TGACCAAAATGTTCAAATAGTCA

Gene: BLi01095: Transcriptional regulator, TetR family
*
Bacillus pumilus SAFR-032

Site:
position = -39
score = 5.99492
sequence = TGACCAAAACGTTCAAATAGTCA

Gene: BPUM_0961: Transcriptional regulator, TetR family
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -40
score = 6.00235
sequence = TGACTAAAATGTTCAAACGGTCA

Gene: BSU10150: Transcriptional regulator, TetR family
*
Geobacillus kaustophilus HTA426

Site:
position = -41
score = 6.53167
sequence = TGACCAAATTGTTCATTTAGTCA

Gene: GK0664: Transcriptional regulator, TetR family
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -66
score = 4.71741
sequence = TGACCGAAATTGATTTTTAGTCA

Gene: Pjdr2_1195: Transcriptional regulator, TetR family
Transcriptional regulator, TetR family
yhgE
*
Anoxybacillus flavithermus WK1

Site:
position = -48
score = 6.44921
sequence = TGACTAAATGAACAAATTGGTCA

Gene: Aflv_2276: Predicted membrane protein
*
Bacillus amyloliquefaciens FZB42

Site:
position = -46
score = 5.77579
sequence = TGACCGTTTTGTCAAATGAGTCA

Gene: RBAM_010390: Predicted membrane protein
*
Bacillus cereus ATCC 14579

Site:
position = -46
score = 6.25813
sequence = TGACTATATGAACATTTTGGTCA

Site:
position = -191
score = 6.06248
sequence = TGACCAAATGAACAATGCGGTCA

Gene: BC1078: Predicted membrane protein
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125

Gene: BH2146: Predicted membrane protein
 
Bacillus licheniformis DSM 13

Gene: BLi01096: Predicted membrane protein
*
Bacillus pumilus SAFR-032

Site:
position = -47
score = 5.97268
sequence = TGACCAAATTGTATATTTAGTCA

Gene: BPUM_0962: Predicted membrane protein
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU10160: Predicted membrane protein
*2
Geobacillus kaustophilus HTA426

Site:
position = 11
score = 6.05395
sequence = TGACCATACGGACAATTTGGTCA

Gene: GK0665: Predicted membrane protein

Site:
position = -272
score = 6.16018
sequence = TGACCGAAACGTCCATTTGGTCA

Site:
position = -49
score = 6.35022
sequence = TGACTAAATGGACAAATCGGTCA

Gene: GK0328: Predicted membrane protein
 
Oceanobacillus iheyensis HTE831
*2
Paenibacillus sp. JDR-2

Gene: Pjdr2_6058: Predicted membrane protein

Site:
position = -58
score = 5.30807
sequence = TGACCGAAATACGAATTTAGTCA

Gene: Pjdr2_1196: Predicted membrane protein
Predicted membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD