Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PaaR in Rhodococcus opacus B4

Properties
Regulator type: Transcription factor
TF locus tag: ROP_23860
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Regulog: PaaR - Nocardiaceae
Statistics of regulated genes:
- Genes 16
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 22 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -148
Score: 5.4
Sequence: TTTCACCGTACGTTCGGTCGGT
Position: -53
Score: 5.7
Sequence: ACCGACCGAAGATTCGGTTATT
Locus tag: ROP_25860
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: ROP_25850
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: ROP_25840
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: ROP_25830
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: ROP_25820
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: ROP_25810
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: ROP_25800
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: ROP_25790
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: ROP_25780
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: ROP_25770
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: ROP_25760
Name: paaQ
Funciton: Transcriptional regulator, AraC family
ROP_25860
paaJ
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
ROP_25850
paaF
Enoyl-CoA hydratase (EC 4.2.1.17)
ROP_25840
paaH
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
ROP_25830
paaG
Enoyl-CoA hydratase (EC 4.2.1.17)
ROP_25820
paaA
Phenylacetate-CoA oxygenase, PaaA subunit
ROP_25810
paaB
Phenylacetate-CoA oxygenase, PaaB subunit
ROP_25800
paaC
Phenylacetate-CoA oxygenase, PaaC subunit
ROP_25790
paaD
Phenylacetate-CoA oxygenase, PaaD subunit
ROP_25780
paaE
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
ROP_25770
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
ROP_25760
paaQ
Transcriptional regulator, AraC family
Position: -122
Score: 5.7
Sequence: ACCAACCGAACGTACGGTTATA
Position: -39
Score: 5.4
Sequence: CCTGACCGAACAATCGGTCGAG
Locus tag: ROP_17540
Name: paaT
Funciton: Predicted phylacetic acid transporter PaaT
ROP_17540
paaT
Predicted phylacetic acid transporter PaaT
Position: -127
Score: 5.7
Sequence: AATAACCGAATCTTCGGTCGGT
Position: -32
Score: 5.4
Sequence: ACCGACCGAACGTACGGTGAAA
Locus tag: ROP_25870
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: ROP_25880
Name: ethD
Funciton: Possible ethyl tert-butyl ether degradation protein EthD
Locus tag: ROP_25890
Name: paaI
Funciton: Phenylacetic acid degradation protein PaaI, thioesterase
ROP_25870
paaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
ROP_25880
ethD
Possible ethyl tert-butyl ether degradation protein EthD
ROP_25890
paaI
Phenylacetic acid degradation protein PaaI, thioesterase
Position: -80
Score: 4.8
Sequence: CTGAACCGAACCTTCGGTCGGC
Locus tag: ROP_23860
Name: paaR
Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
ROP_23860
paaR
Transcriptional regulator of phenylacetic acid degradation, TetR family
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