Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PdhR in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_0318
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Pyruvate metabolism
Effector: Pyruvate
Regulog: PdhR - Shewanellaceae
Statistics of regulated genes:
- Genes 14
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 109 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -214
Score: 6.4
Sequence: AATTGGTCTTACCAATT
Locus tag: Swoo_2882
Name: pflX
Funciton: pyruvate formate lyase-related hypothetical transporter
Swoo_2882
pflX
pyruvate formate lyase-related hypothetical transporter
Position: -143
Score: 6.3
Sequence: AATTGGTAATACCAATT
Locus tag: Swoo_0636
Name: deaD
Funciton: Cold-shock DEAD-box protein A
Swoo_0636
deaD
Cold-shock DEAD-box protein A
Position: -159
Score: 4.3
Sequence: TAATGGTCTGACCGCTA
Position: -39
Score: 6.4
Sequence: AATTGGTAAGACCAATT
Locus tag: Swoo_0318
Name: pdhR
Funciton: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Locus tag: Swoo_0319
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: Swoo_0320
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: Swoo_0321
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Swoo_0318
pdhR
Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Swoo_0319
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Swoo_0320
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Swoo_0321
lpdA
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -243
Score: 5.7
Sequence: TTTTGGTATGACCAATT
Locus tag: Swoo_3337
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Swoo_3336
Name: oadA
Funciton: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Locus tag: Swoo_3335
Name: oadB
Funciton: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
Swoo_3337
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Swoo_3336
oadA
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Swoo_3335
oadB
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
Position: -235
Score: 6.4
Sequence: AATTGGTCTTACCAATT
Locus tag: Swoo_2883
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: Swoo_2884
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Swoo_2883
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Swoo_2884
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -335
Score: 5.2
Sequence: AATTTGTCTGACAAATT
Locus tag: Swoo_1528
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Swoo_1528
aceB
Malate synthase (EC 2.3.3.9)
Position: -351
Score: 6.4
Sequence: AATTGGTAAGACCAATT
Locus tag: Swoo_2881
Name: null
Funciton: hypothetical protein
Locus tag: Swoo_2880
Name: focA
Funciton: formate transporter
Swoo_2881
hypothetical protein
Swoo_2880
focA
formate transporter
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