Regulon of PdhR in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_0374 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Pyruvate metabolism |
| Effector: | Pyruvate |
| Regulog: | PdhR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PdhR
- By TF family - GntR/Others
- By effector - Pyruvate
- By pathway - Pyruvate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -169
Score: 6.1 Sequence: TATTGGTAAGACCAATT
Locus tag: Sama_1051
Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Sama_1052
Name: oadA Funciton: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Locus tag: Sama_1053
Name: oadB Funciton: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) |
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oadG
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Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
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oadA
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Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
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oadB
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Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
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Position: -404
Score: 6 Sequence: AATTGGTCTTACCAAAT
Locus tag: Sama_2439
Name: lldP Funciton: L-lactate permease
Locus tag: Sama_2440
Name: dld Funciton: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing |
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lldP
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L-lactate permease
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dld
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Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
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Position: -180
Score: 6.4 Sequence: AATTGGTATGACCAATT
Locus tag: Sama_1499
Name: pflX Funciton: pyruvate formate lyase-related hypothetical transporter |
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pflX
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pyruvate formate lyase-related hypothetical transporter
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Position: -298
Score: 5.1 Sequence: TGTTGGTAAGACAAATT
Position: -205
Score: 5.7 Sequence: GTTTGGTCTGACCAATT
Locus tag: Sama_2381
Name: aceB Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sama_2380
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
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aceB
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Malate synthase (EC 2.3.3.9)
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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Position: -152
Score: 4.8 Sequence: AATTGGTCTGACCCCAT
Position: -39
Score: 6.4 Sequence: AATTGGTAAGACCAATT
Locus tag: Sama_0374
Name: pdhR Funciton: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Locus tag: Sama_0375
Name: aceE Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: Sama_0376
Name: aceF Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: Sama_0377
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
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pdhR
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Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
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aceE
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Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
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aceF
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Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
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lpdA
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Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
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Position: -163
Score: 6.4 Sequence: AATTGGTCTTACCAATT
Locus tag: Sama_1498
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: Sama_1497
Name: pflA Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
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pflB
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Pyruvate formate-lyase (EC 2.3.1.54)
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pflA
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Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
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Position: -136
Score: 5.6 Sequence: AATTGGTCAGACCTATA
Locus tag: Sama_1422
Name: gltA Funciton: citrate synthase |
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gltA
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citrate synthase
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Position: -293
Score: 5.6 Sequence: TATAGGTCTGACCAATT
Locus tag: Sama_1423
Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Sama_1424
Name: sdhD Funciton: succinate dehydrogenase, hydrophobic membrane anchor protein
Locus tag: Sama_1425
Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Sama_1426
Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein |
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sdhC
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succinate dehydrogenase, cytochrome b556 subunit
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sdhD
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succinate dehydrogenase, hydrophobic membrane anchor protein
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sdhA
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succinate dehydrogenase, flavoprotein subunit
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sdhB
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succinate dehydrogenase, iron-sulfur protein
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Position: -114
Score: 5.8 Sequence: AATTGGACTGACCAATT
Locus tag: Sama_0254
Name: ppc Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Sama_0253
Name: SO0273 Funciton: protein of unknown function DUF1439 |
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ppc
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Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
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SO0273
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protein of unknown function DUF1439
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |