Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PdhR in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_0374
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Pyruvate metabolism
Effector: Pyruvate
Regulog: PdhR - Shewanellaceae
Statistics of regulated genes:
- Genes 21
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 109 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -169
Score: 6.1
Sequence: TATTGGTAAGACCAATT
Locus tag: Sama_1051
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Sama_1052
Name: oadA
Funciton: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Locus tag: Sama_1053
Name: oadB
Funciton: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
Sama_1051
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Sama_1052
oadA
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Sama_1053
oadB
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
Position: -404
Score: 6
Sequence: AATTGGTCTTACCAAAT
Locus tag: Sama_2439
Name: lldP
Funciton: L-lactate permease
Locus tag: Sama_2440
Name: dld
Funciton: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Sama_2439
lldP
L-lactate permease
Sama_2440
dld
Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -180
Score: 6.4
Sequence: AATTGGTATGACCAATT
Locus tag: Sama_1499
Name: pflX
Funciton: pyruvate formate lyase-related hypothetical transporter
Sama_1499
pflX
pyruvate formate lyase-related hypothetical transporter
Position: -298
Score: 5.1
Sequence: TGTTGGTAAGACAAATT
Position: -205
Score: 5.7
Sequence: GTTTGGTCTGACCAATT
Locus tag: Sama_2381
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sama_2380
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sama_2381
aceB
Malate synthase (EC 2.3.3.9)
Sama_2380
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -152
Score: 4.8
Sequence: AATTGGTCTGACCCCAT
Position: -39
Score: 6.4
Sequence: AATTGGTAAGACCAATT
Locus tag: Sama_0374
Name: pdhR
Funciton: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Locus tag: Sama_0375
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: Sama_0376
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: Sama_0377
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Sama_0374
pdhR
Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Sama_0375
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Sama_0376
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Sama_0377
lpdA
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -163
Score: 6.4
Sequence: AATTGGTCTTACCAATT
Locus tag: Sama_1498
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: Sama_1497
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Sama_1498
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Sama_1497
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -136
Score: 5.6
Sequence: AATTGGTCAGACCTATA
Locus tag: Sama_1422
Name: gltA
Funciton: citrate synthase
Sama_1422
gltA
citrate synthase
Position: -293
Score: 5.6
Sequence: TATAGGTCTGACCAATT
Locus tag: Sama_1423
Name: sdhC
Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Sama_1424
Name: sdhD
Funciton: succinate dehydrogenase, hydrophobic membrane anchor protein
Locus tag: Sama_1425
Name: sdhA
Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Sama_1426
Name: sdhB
Funciton: succinate dehydrogenase, iron-sulfur protein
Sama_1423
sdhC
succinate dehydrogenase, cytochrome b556 subunit
Sama_1424
sdhD
succinate dehydrogenase, hydrophobic membrane anchor protein
Sama_1425
sdhA
succinate dehydrogenase, flavoprotein subunit
Sama_1426
sdhB
succinate dehydrogenase, iron-sulfur protein
Position: -114
Score: 5.8
Sequence: AATTGGACTGACCAATT
Locus tag: Sama_0254
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Sama_0253
Name: SO0273
Funciton: protein of unknown function DUF1439
Sama_0254
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Sama_0253
SO0273
protein of unknown function DUF1439
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