Regulon of PdhR in Shewanella sp ANA-3
| Regulator type: | Transcription factor |
| TF locus tag: | Shewana3_0425 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Pyruvate metabolism |
| Effector: | Pyruvate |
| Regulog: | PdhR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PdhR
- By TF family - GntR/Others
- By effector - Pyruvate
- By pathway - Pyruvate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -38
Score: 6.4 Sequence: AATTGGTAAGACCAATT
Locus tag: Shewana3_0425
Name: pdhR Funciton: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Locus tag: Shewana3_0426
Name: aceE Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: Shewana3_0427
Name: aceF Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: Shewana3_0428
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
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pdhR
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Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
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aceE
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Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
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aceF
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Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
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lpdA
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Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
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Position: -111
Score: 6.4 Sequence: AATTGGTCTTACCAATT
Locus tag: Shewana3_3166
Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Shewana3_3165
Name: oadA Funciton: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Locus tag: Shewana3_3164
Name: oadB Funciton: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3) |
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oadG
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Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
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oadA
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Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
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oadB
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Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
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Position: -246
Score: 6.4 Sequence: AATTGGTCTTACCAATT
Locus tag: Shewana3_1555
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: Shewana3_1554
Name: pflA Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
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pflB
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Pyruvate formate-lyase (EC 2.3.1.54)
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pflA
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Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
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Position: -306
Score: 4.6 Sequence: AAGTTGTCTGACAAATT
Position: -214
Score: 5.8 Sequence: TCTTGGTCAGACCAATT
Locus tag: Shewana3_2943
Name: aceB Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Shewana3_2942
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
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aceB
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Malate synthase (EC 2.3.3.9)
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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Position: -253
Score: 6.4 Sequence: AATTGGTATGACCAATT
Locus tag: Shewana3_1556
Name: focA Funciton: formate transporter |
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focA
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formate transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |