Regulon of PaaR2 in Deinococcus geothermalis DSM 11300
| Regulator type: | Transcription factor |
| TF locus tag: | Dgeo_0117 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR2 - Deinococcus-Thermus |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 8 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By taxonomy - Deinococcus-Thermus
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -90
Score: 6.2 Sequence: CTAACGAGCGTTAGCTAG
Locus tag: Dgeo_2338
Name: bkdA1 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Dgeo_2339
Name: bkdA2 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Dgeo_2340
Name: DR0031 Funciton: hypothetical protein
Locus tag: Dgeo_2341
Name: bkdB Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
|||
|
bkdA1
|
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
|
||
|
bkdA2
|
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
|
||
|
DR0031
|
hypothetical protein
|
||
|
bkdB
|
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
|
||
|
Position: -89
Score: 5.3 Sequence: CTAACGACCGTTCGGGAG
Locus tag: Dgeo_0467
Name: accB Funciton: Biotin carboxyl carrier protein of acetyl-CoA carboxylase
Locus tag: Dgeo_0466
Name: accC Funciton: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) |
|||
|
accB
|
Biotin carboxyl carrier protein of acetyl-CoA carboxylase
|
||
|
accC
|
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
|
||
|
Position: -61
Score: 4.8 Sequence: CAAACGGACGTTCACTTG
Locus tag: Dgeo_0117
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
|||
|
paaR
|
Transcriptional regulator of phenylacetic acid degradation, TetR family
|
||
|
Position: -35
Score: 5.6 Sequence: CCAACGAACGCTTGTTTG
Locus tag: Dgeo_1253
Name: hmgcL Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Dgeo_1254
Name: maoC Funciton: enoyl-CoA hydratase-like enzyme |
|||
|
hmgcL
|
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
|
||
|
maoC
|
enoyl-CoA hydratase-like enzyme
|
||
|
Position: -38
Score: 6.1 Sequence: CTAACGAGCGTTTGTTTC
Locus tag: Dgeo_0862
Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
|||
|
mcm
|
Methylmalonyl-CoA mutase (EC 5.4.99.2)
|
||
|
Position: -27
Score: 6.2 Sequence: CTAACAAGCGTTTGGTAG
Locus tag: Dgeo_1179
Name: bcd2 Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
|||
|
bcd2
|
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
|
||
|
Position: -55
Score: 5.7 Sequence: CTAACGTGCGTTCGTTCG
Locus tag: Dgeo_1320
Name: mcm2 Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
|||
|
mcm2
|
Methylmalonyl-CoA mutase (EC 5.4.99.2)
|
||
|
Position: -31
Score: 6.4 Sequence: CTAACGGGCGTTTGTTAG
Locus tag: Dgeo_0811
Name: pccB Funciton: Propionyl-CoA carboxylase (EC 6.4.1.3)
Locus tag: Dgeo_0812
Name: bcd Funciton: Butyryl-CoA dehydrogenase (EC 1.3.8.1) |
|||
|
pccB
|
Propionyl-CoA carboxylase (EC 6.4.1.3)
|
||
|
bcd
|
Butyryl-CoA dehydrogenase (EC 1.3.8.1)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |