Regulog RbkR - Methanosarcinales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Euryarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Methanosarcinales
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Methanococcoides burtonii DSM 6242 | 2 | 1 |
| Methanohalophilus mahii DSM 5219 | 2 | 1 |
| Methanosaeta thermophila PT | ||
| Methanosarcina acetivorans C2A | 2 | 1 |
| Methanosarcina barkeri str. fusaro | 2 | 1 |
| Methanosarcina mazei Goe1 | 2 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| rbkR |
*
Methanococcoides burtonii DSM 6242 Site: position = -58 score = 6.05207 sequence = CGTCTCATATTTGAGATG Site: position = -40 score = 5.61108 sequence = CATCTCATATTTGAGGCA Gene: Mbur_1724: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Methanohalophilus mahii DSM 5219 Site: position = -29 score = 5.93117 sequence = CGTCTCAATTTTGAGATG Gene: Mmah_2024: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
|
*
Methanosarcina acetivorans C2A Site: position = -15 score = 5.89468 sequence = CATCTCATTATTGAGATG Site: position = 3 score = 4.98863 sequence = CGTCTCAAAATTAAGGCA Gene: MA0547: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Methanosarcina barkeri str. fusaro Site: position = -46 score = 5.68768 sequence = CATCTCAGAATTGAGATG Site: position = -28 score = 5.54105 sequence = CATCTCAAAATTAAGATA Gene: Mbar_A1523: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Methanosarcina mazei Goe1 Site: position = -33 score = 5.28452 sequence = CATCTCAAAATTAAGGTA Site: position = -51 score = 5.71494 sequence = TATCTCATAATTGAGACG Gene: MM1709: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
| ribB |
Gene: Mbur_1723: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Gene: Mmah_2023: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
Gene: MA0548: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Gene: Mbar_A1524: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Gene: MM1710: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |