Regulog HrcA - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	HrcA
Regulation mode:	repressor
Biological process:	Heat shock response
Effector:	Heat shock
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By trascription factor - HrcA
By taxonomy - Bifidobacteriaceae
By TF family - HrcA
By effector - Heat shock
By pathway - Heat shock response

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium adolescentis ATCC 15703	4	3
Bifidobacterium angulatum DSM 20098	2	2
Bifidobacterium animalis subsp. lactis AD011	4	3
Bifidobacterium bifidum NCIMB 41171	4	3
Bifidobacterium breve DSM 20213	4	3
Bifidobacterium dentium Bd1	4	3
Bifidobacterium gallicum DSM 20093	4	3
Bifidobacterium longum NCC2705	4	3
Bifidobacterium longum subsp. infantis ATCC 15697	4	3
Gardnerella vaginalis 409-05	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
groL	* Bifidobacterium adolescentis ATCC 15703 Site: position = -137 score = 7.00171 sequence = TTGGCACTCTCGACGTGAGAGTGCTAA Site: position = -102 score = 7.06577 sequence = TTAGCACTCGACGAGTGAGAGTGATAA Gene: BAD_0565: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium angulatum DSM 20098 Site: position = -95 score = 7.15173 sequence = TTGGCACTCTCGCACCTTGAGTGCTAA Site: position = -60 score = 7.13507 sequence = TTAGCACTCAAGGTGCGAGAGTGATAA Gene: BIFANG_00586: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -116 score = 7.08243 sequence = TTGGCACTCGACCACTGAGAGTGCTAA Gene: BLA_1183: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium bifidum NCIMB 41171 Site: position = -142 score = 7.29808 sequence = TTGGCACTCGGGCACCGAGAGTGCTAA Site: position = -107 score = 6.45657 sequence = TTAGCACTCGGGGAGTGAGAGTGACAG Gene: BbifN4_010100002804: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium breve DSM 20213 Site: position = -111 score = 7.0116 sequence = TTAGCACTCGGAGATCGAGAGTGATAA Site: position = -146 score = 6.96599 sequence = TTGGCACTCGGCAAGGGCGAGTGCTAA Gene: BIFBRE_00532: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium dentium Bd1 Site: position = -140 score = 7.24151 sequence = TTGGCACTCGAGGCCCGAGAGTGCTAA Site: position = -104 score = 7.1641 sequence = TTAGCACTCGAGGAGTGAGAGTGATAA Gene: BDP_0772: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium gallicum DSM 20093 Site: position = -134 score = 7.04556 sequence = TTGGCACTCGACCAAGGAGAGTGCTAA Site: position = -98 score = 7.10578 sequence = TTAGCACTCGAGGCGTGAGAGTGATAA Gene: BIFGAL_01875: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium longum NCC2705 Site: position = -62 score = 5.23772 sequence = TCACGACTCGACGCTTGCGAGTGATAA Site: position = -110 score = 6.95328 sequence = TTAGCACTCGGAGGTCGAGAGTGATAA Site: position = -145 score = 7.12046 sequence = TTGGCACTCGGCGGGCGCGAGTGCTAA Gene: BL0002: Heat shock protein 60 family chaperone GroEL	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -145 score = 6.98786 sequence = TTGGCACTCGGCGGTCGCGAGTGCTAA Site: position = -62 score = 5.23772 sequence = TCACGACTCGACGCTTGCGAGTGATAA Site: position = -110 score = 6.95328 sequence = TTAGCACTCGGAGGTCGAGAGTGATAA Gene: Blon_0694: Heat shock protein 60 family chaperone GroEL	* Gardnerella vaginalis 409-05 Site: position = -95 score = 6.82507 sequence = TTAGCACTCAAGCCTTGAGAGTGATAA Site: position = -130 score = 6.97715 sequence = TTGGCACTCGGGTACATAGAGTGCTAA Gene: HMPREF0424_0717: Heat shock protein 60 family chaperone GroEL	Heat shock protein 60 family chaperone GroEL

CRON 2.
hrcA	* Bifidobacterium adolescentis ATCC 15703 Site: position = -115 score = 7.12255 sequence = TTAGCACTCCGGGCGCCGGAGTGCTAA Gene: BAD_0828: Heat-inducible transcription repressor HrcA	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01435: Heat-inducible transcription repressor HrcA	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -62 score = 6.92687 sequence = TTAGCACTCCTGTATGCAGAGTGCTAA Gene: BLA_1356: Heat-inducible transcription repressor HrcA	* Bifidobacterium bifidum NCIMB 41171 Site: position = -152 score = 6.92272 sequence = TTAGCACTCAAGGGCAAAGAGTGCTAA Gene: BbifN4_010100004769: Heat-inducible transcription repressor HrcA	* Bifidobacterium breve DSM 20213 Site: position = -95 score = 6.65009 sequence = TTAGCACTCGAAACCAATGAGTGCTAA Gene: BIFBRE_01333: Heat-inducible transcription repressor HrcA	* Bifidobacterium dentium Bd1 Site: position = -138 score = 6.86422 sequence = TTAGCACTCCTCGGCCGGGAGTGCTAA Gene: BDP_1146: Heat-inducible transcription repressor HrcA	* Bifidobacterium gallicum DSM 20093 Site: position = -274 score = 7.36243 sequence = TTAGCACTCTGGCGCCAAGAGTGCTAA Gene: BIFGAL_01682: Heat-inducible transcription repressor HrcA	* Bifidobacterium longum NCC2705 Site: position = -191 score = 6.63919 sequence = TTAGCACTCAAGCCTAAGGAGTGCTAA Gene: BL0718: Heat-inducible transcription repressor HrcA	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -191 score = 6.63919 sequence = TTAGCACTCAAGCCTAAGGAGTGCTAA Gene: Blon_1097: Heat-inducible transcription repressor HrcA	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0901: Heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor HrcA
dnaJ	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0827: Chaperone protein DnaJ	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01434: Chaperone protein DnaJ	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1355: Chaperone protein DnaJ	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100004764: Chaperone protein DnaJ	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01334: Chaperone protein DnaJ	Bifidobacterium dentium Bd1 Gene: BDP_1147: Chaperone protein DnaJ	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_01681: Chaperone protein DnaJ	Bifidobacterium longum NCC2705 Gene: BL0719: Chaperone protein DnaJ	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_1098: Chaperone protein DnaJ	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0900: Chaperone protein DnaJ	Chaperone protein DnaJ

CRON 3.
groS	* Bifidobacterium adolescentis ATCC 15703 Site: position = -146 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BAD_0292: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium angulatum DSM 20098 Site: position = -142 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BIFANG_00124: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -137 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BLA_0343: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium bifidum NCIMB 41171 Site: position = -150 score = 6.92141 sequence = TTAGCAGTCGAGTTGGCAGAGTGCTAA Gene: BbifN4_010100007652: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium breve DSM 20213 Site: position = -138 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BIFBRE_00229: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium dentium Bd1 Site: position = -147 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BDP_0405: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium gallicum DSM 20093 Site: position = -167 score = 7.24292 sequence = TTAGCACTCGAATTGGCAGAGTGCTAA Gene: BIFGAL_00768: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium longum NCC2705 Site: position = -140 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BL1558: Heat shock protein 60 family co-chaperone GroES	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -140 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: Blon_2257: Heat shock protein 60 family co-chaperone GroES	* Gardnerella vaginalis 409-05 Site: position = -140 score = 7.36115 sequence = TTAGCACTCGAGTTGTTAGAGTGCTAA Gene: HMPREF0424_0234: Heat shock protein 60 family co-chaperone GroES	Heat shock protein 60 family co-chaperone GroES

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HrcA - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --