Regulog HrcA - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - HrcA
- By taxonomy - Bifidobacteriaceae
- By TF family - HrcA
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | 4 | 3 |
| Bifidobacterium angulatum DSM 20098 | 2 | 2 |
| Bifidobacterium animalis subsp. lactis AD011 | 4 | 3 |
| Bifidobacterium bifidum NCIMB 41171 | 4 | 3 |
| Bifidobacterium breve DSM 20213 | 4 | 3 |
| Bifidobacterium dentium Bd1 | 4 | 3 |
| Bifidobacterium gallicum DSM 20093 | 4 | 3 |
| Bifidobacterium longum NCC2705 | 4 | 3 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | 4 | 3 |
| Gardnerella vaginalis 409-05 | 2 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| groL |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -137 score = 7.00171 sequence = TTGGCACTCTCGACGTGAGAGTGCTAA Site: position = -102 score = 7.06577 sequence = TTAGCACTCGACGAGTGAGAGTGATAA Gene: BAD_0565: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium angulatum DSM 20098 Site: position = -95 score = 7.15173 sequence = TTGGCACTCTCGCACCTTGAGTGCTAA Site: position = -60 score = 7.13507 sequence = TTAGCACTCAAGGTGCGAGAGTGATAA Gene: BIFANG_00586: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -116 score = 7.08243 sequence = TTGGCACTCGACCACTGAGAGTGCTAA Gene: BLA_1183: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -142 score = 7.29808 sequence = TTGGCACTCGGGCACCGAGAGTGCTAA Site: position = -107 score = 6.45657 sequence = TTAGCACTCGGGGAGTGAGAGTGACAG Gene: BbifN4_010100002804: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium breve DSM 20213 Site: position = -111 score = 7.0116 sequence = TTAGCACTCGGAGATCGAGAGTGATAA Site: position = -146 score = 6.96599 sequence = TTGGCACTCGGCAAGGGCGAGTGCTAA Gene: BIFBRE_00532: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium dentium Bd1 Site: position = -140 score = 7.24151 sequence = TTGGCACTCGAGGCCCGAGAGTGCTAA Site: position = -104 score = 7.1641 sequence = TTAGCACTCGAGGAGTGAGAGTGATAA Gene: BDP_0772: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium gallicum DSM 20093 Site: position = -134 score = 7.04556 sequence = TTGGCACTCGACCAAGGAGAGTGCTAA Site: position = -98 score = 7.10578 sequence = TTAGCACTCGAGGCGTGAGAGTGATAA Gene: BIFGAL_01875: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium longum NCC2705 Site: position = -62 score = 5.23772 sequence = TCACGACTCGACGCTTGCGAGTGATAA Site: position = -110 score = 6.95328 sequence = TTAGCACTCGGAGGTCGAGAGTGATAA Site: position = -145 score = 7.12046 sequence = TTGGCACTCGGCGGGCGCGAGTGCTAA Gene: BL0002: Heat shock protein 60 family chaperone GroEL |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -145 score = 6.98786 sequence = TTGGCACTCGGCGGTCGCGAGTGCTAA Site: position = -62 score = 5.23772 sequence = TCACGACTCGACGCTTGCGAGTGATAA Site: position = -110 score = 6.95328 sequence = TTAGCACTCGGAGGTCGAGAGTGATAA Gene: Blon_0694: Heat shock protein 60 family chaperone GroEL |
*
Gardnerella vaginalis 409-05 Site: position = -95 score = 6.82507 sequence = TTAGCACTCAAGCCTTGAGAGTGATAA Site: position = -130 score = 6.97715 sequence = TTGGCACTCGGGTACATAGAGTGCTAA Gene: HMPREF0424_0717: Heat shock protein 60 family chaperone GroEL |
Heat shock protein 60 family chaperone GroEL |
| CRON 2. | |||||||||||
| hrcA |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -115 score = 7.12255 sequence = TTAGCACTCCGGGCGCCGGAGTGCTAA Gene: BAD_0828: Heat-inducible transcription repressor HrcA |
Gene: BIFANG_01435: Heat-inducible transcription repressor HrcA |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -62 score = 6.92687 sequence = TTAGCACTCCTGTATGCAGAGTGCTAA Gene: BLA_1356: Heat-inducible transcription repressor HrcA |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -152 score = 6.92272 sequence = TTAGCACTCAAGGGCAAAGAGTGCTAA Gene: BbifN4_010100004769: Heat-inducible transcription repressor HrcA |
*
Bifidobacterium breve DSM 20213 Site: position = -95 score = 6.65009 sequence = TTAGCACTCGAAACCAATGAGTGCTAA Gene: BIFBRE_01333: Heat-inducible transcription repressor HrcA |
*
Bifidobacterium dentium Bd1 Site: position = -138 score = 6.86422 sequence = TTAGCACTCCTCGGCCGGGAGTGCTAA Gene: BDP_1146: Heat-inducible transcription repressor HrcA |
*
Bifidobacterium gallicum DSM 20093 Site: position = -274 score = 7.36243 sequence = TTAGCACTCTGGCGCCAAGAGTGCTAA Gene: BIFGAL_01682: Heat-inducible transcription repressor HrcA |
*
Bifidobacterium longum NCC2705 Site: position = -191 score = 6.63919 sequence = TTAGCACTCAAGCCTAAGGAGTGCTAA Gene: BL0718: Heat-inducible transcription repressor HrcA |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -191 score = 6.63919 sequence = TTAGCACTCAAGCCTAAGGAGTGCTAA Gene: Blon_1097: Heat-inducible transcription repressor HrcA |
Gene: HMPREF0424_0901: Heat-inducible transcription repressor HrcA |
Heat-inducible transcription repressor HrcA |
| dnaJ |
Gene: BAD_0827: Chaperone protein DnaJ |
Gene: BIFANG_01434: Chaperone protein DnaJ |
Gene: BLA_1355: Chaperone protein DnaJ |
Gene: BbifN4_010100004764: Chaperone protein DnaJ |
Gene: BIFBRE_01334: Chaperone protein DnaJ |
Gene: BDP_1147: Chaperone protein DnaJ |
Gene: BIFGAL_01681: Chaperone protein DnaJ |
Gene: BL0719: Chaperone protein DnaJ |
Gene: Blon_1098: Chaperone protein DnaJ |
Gene: HMPREF0424_0900: Chaperone protein DnaJ |
Chaperone protein DnaJ |
| CRON 3. | |||||||||||
| groS |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -146 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BAD_0292: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium angulatum DSM 20098 Site: position = -142 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BIFANG_00124: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -137 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BLA_0343: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -150 score = 6.92141 sequence = TTAGCAGTCGAGTTGGCAGAGTGCTAA Gene: BbifN4_010100007652: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium breve DSM 20213 Site: position = -138 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BIFBRE_00229: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium dentium Bd1 Site: position = -147 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BDP_0405: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium gallicum DSM 20093 Site: position = -167 score = 7.24292 sequence = TTAGCACTCGAATTGGCAGAGTGCTAA Gene: BIFGAL_00768: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium longum NCC2705 Site: position = -140 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: BL1558: Heat shock protein 60 family co-chaperone GroES |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -140 score = 7.38014 sequence = TTAGCACTCGAGTTGGCAGAGTGCTAA Gene: Blon_2257: Heat shock protein 60 family co-chaperone GroES |
*
Gardnerella vaginalis 409-05 Site: position = -140 score = 7.36115 sequence = TTAGCACTCGAGTTGTTAGAGTGCTAA Gene: HMPREF0424_0234: Heat shock protein 60 family co-chaperone GroES |
Heat shock protein 60 family co-chaperone GroES |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |