Regulog LexA - Staphylococcaceae
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 16 | 10 |
| Staphylococcus capitis SK14 | 16 | 10 |
| Staphylococcus epidermidis ATCC 12228 | 16 | 10 |
| Staphylococcus carnosus subsp. carnosus TM300 | 14 | 8 |
| Staphylococcus haemolyticus JCSC1435 | 16 | 10 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 16 | 10 |
| Macrococcus caseolyticus JCSC5402 | 8 | 6 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| SA1738 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -51 score = 5.25912 sequence = AACAGAACACATGTTCGTAT Gene: SA1738: SPBc2 prophage-derived uncharacterized protein |
*
Staphylococcus capitis SK14 Site: position = -52 score = 5.61283 sequence = AATAGAACAAATGTTCGTAT Gene: STACA0001_1975: SPBc2 prophage-derived uncharacterized protein |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -52 score = 5.58962 sequence = AACAGAACAAATGTTCGTAT Gene: SE1605: SPBc2 prophage-derived uncharacterized protein |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -59 score = 5.28476 sequence = TAGCGAACAAGTGTTCGTAT Gene: Sca_1497: SPBc2 prophage-derived uncharacterized protein |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -39 score = 5.43778 sequence = ATgCGAACATATGTTCtata Gene: SH0364: SPBc2 prophage-derived uncharacterized protein |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -51 score = 5.58655 sequence = AATAGAACGTATGTTCGTAT Gene: SSP0868: SPBc2 prophage-derived uncharacterized protein |
*
Macrococcus caseolyticus JCSC5402 Site: position = -34 score = 5.42512 sequence = AACAGAACGTACGTTCGTAT Gene: MCCL_1665: SPBc2 prophage-derived uncharacterized protein |
SPBc2 prophage-derived uncharacterized protein |
| CRON 2. | ||||||||
| uvrX |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -79 score = 5.0384 sequence = AACAGAACATTTGTTCTAAA Site: position = -51 score = 4.8399 sequence = AATAGAACACGTGTTCGTAT Gene: SA1196: Putative UV-damage repair protein |
*
Staphylococcus capitis SK14 Site: position = -78 score = 5.00724 sequence = AATAGAACATTCGTTCTTGT Site: position = -49 score = 4.91905 sequence = ATAAGAACACGTGTTCTTAT Gene: STACA0001_1610: Putative UV-damage repair protein |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -77 score = 5.69199 sequence = ATAAGAACAAATGTTCTTAT Site: position = -48 score = 4.66791 sequence = AATAGAACACGTGTTCTTAT Gene: SE1046: Putative UV-damage repair protein |
*2
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -82 score = 5.24598 sequence = AACAGAACATTTGTTCTTTA Site: position = -53 score = 5.72686 sequence = ATAAGAACAAATGTTCGCAT Gene: Sca_1008: Putative UV-damage repair protein Gene: Sca_1009: Putative UV-damage repair protein |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -81 score = 4.94538 sequence = TAAAGAACATTAGTTCTTAT Site: position = -52 score = 5.84219 sequence = AAAAGAACAAATGTTCGTAT Gene: SH1545: Putative UV-damage repair protein |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -51 score = 5.61283 sequence = AATAGAACATTTGTTCGTAT Site: position = -80 score = 5.051 sequence = ATTGGAACATTTGTTCTTAT Gene: SSP1388: Putative UV-damage repair protein |
*
Macrococcus caseolyticus JCSC5402 Site: position = -10 score = 4.86661 sequence = AATAGAACGTATGTTCTGGT Site: position = -38 score = 5.41456 sequence = ATAAGAACATACGTTCTATT Gene: MCCL_1033: Putative UV-damage repair protein |
Putative UV-damage repair protein |
| CRON 3. | ||||||||
| uvrB |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -107 score = 5.38665 sequence = TTACGAACAAACGTTTGCTT Gene: SA0713: excinuclease ABC subunit B |
*
Staphylococcus capitis SK14 Site: position = -126 score = 5.37762 sequence = AAGCGAACAAACGTTTGCTT Gene: STACA0001_0273: excinuclease ABC subunit B |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -130 score = 5.67474 sequence = AAGCGAACAAATGTTTGTAT Gene: SE0541: excinuclease ABC subunit B |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -267 score = 4.76508 sequence = CTGCGAACAGATGTTTGTAC Gene: Sca_0407: excinuclease ABC subunit B |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -266 score = 5.53652 sequence = AAGCGAACAAACGTTTGTAT Gene: SH2131: excinuclease ABC subunit B |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -176 score = 5.5586 sequence = CTACGAACAAATGTTTGTTT Gene: SSP1959: excinuclease ABC subunit B |
*
Macrococcus caseolyticus JCSC5402 Site: position = -67 score = 5.33608 sequence = TTACGAACAAATGTTTGTAC Gene: MCCL_0509: excinuclease ABC subunit B |
excinuclease ABC subunit B |
| uvrA |
Gene: SA0714: exinuclease ABC subunit A |
Gene: STACA0001_0272: exinuclease ABC subunit A |
Gene: SE0542: exinuclease ABC subunit A |
Gene: Sca_0408: exinuclease ABC subunit A |
Gene: SH2130: exinuclease ABC subunit A |
Gene: SSP1958: exinuclease ABC subunit A |
Gene: MCCL_0510: exinuclease ABC subunit A |
exinuclease ABC subunit A |
| CRON 4. | ||||||||
| sbcD |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -31 score = 5.30406 sequence = AAGCGAACAAATGTTCTATA Gene: SA1180: exonuclease SbcD |
*
Staphylococcus capitis SK14 Site: position = -33 score = 5.86398 sequence = ATACGAACAAATGTTCTTAT Gene: STACA0001_1593: exonuclease SbcD |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -33 score = 5.70397 sequence = AAACGAACAAACGTTCTTAT Gene: SE1028: exonuclease SbcD |
Gene: Sca_0987: exonuclease SbcD |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -31 score = 5.18937 sequence = ACACGAACAAATGTTCTAAA Gene: SH1562: exonuclease SbcD |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -33 score = 5.24314 sequence = ATACGAACAAACGTTCTAAG Gene: SSP1412: exonuclease SbcD |
Gene: MCCL_1002: exonuclease SbcD |
exonuclease SbcD |
| sbcC |
Gene: SA1181: exonuclease SbcC |
Gene: STACA0001_1594: exonuclease SbcC |
Gene: SE1029: exonuclease SbcC |
Gene: Sca_0988: exonuclease SbcC |
Gene: SH1561: exonuclease SbcC |
Gene: SSP1411: exonuclease SbcC |
Gene: MCCL_1003: exonuclease SbcC |
exonuclease SbcC |
| CRON 5. | ||||||||
| SA1975 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -66 score = 4.92942 sequence = ACCCGAAAATATGTTCGTGT Gene: SA1975: predicted membrane-bound hydrolase |
*
Staphylococcus capitis SK14 Site: position = -65 score = 5.18025 sequence = ACACGAAAGTATGTTCGCTT Gene: STACA0001_1306: predicted membrane-bound hydrolase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -66 score = 5.14971 sequence = GTACGAAAGTATGTTCGCAT Gene: SE1762: predicted membrane-bound hydrolase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -68 score = 5.12891 sequence = GACCGAAAATATGTTCGTTT Gene: Sca_1672: predicted membrane-bound hydrolase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -66 score = 5.24514 sequence = CACCGAAAATATGTTCGTAT Gene: SH0869: predicted membrane-bound hydrolase |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -66 score = 5.34754 sequence = TTACGAAAGTATGTTCGCAT Gene: SSP0715: predicted membrane-bound hydrolase |
Gene: MCCL_0309: predicted membrane-bound hydrolase |
predicted membrane-bound hydrolase |
| SA1974 |
Gene: SA1974: UDP-N-acetylglucosamine pyrophosphorylase |
Gene: STACA0001_1307: UDP-N-acetylglucosamine pyrophosphorylase |
Gene: SE1761: UDP-N-acetylglucosamine pyrophosphorylase |
Gene: Sca_1671: UDP-N-acetylglucosamine pyrophosphorylase |
Gene: SH0870: UDP-N-acetylglucosamine pyrophosphorylase |
Gene: SSP0716: UDP-N-acetylglucosamine pyrophosphorylase |
Gene: MCCL_0310: UDP-N-acetylglucosamine pyrophosphorylase |
UDP-N-acetylglucosamine pyrophosphorylase |
| SA1973 |
Gene: SA1973: hemolysin III |
Gene: STACA0001_1308: hemolysin III |
Gene: SE1760: hemolysin III |
Gene: Sca_1670: hemolysin III |
Gene: SH0871: hemolysin III |
Gene: SSP0717: hemolysin III |
Gene: MCCL_1812: hemolysin III |
hemolysin III |
| CRON 6. | ||||||||
| SA1749 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -133 score = 5.70156 sequence = AACAGAACATATGTTCGTAT Gene: SA1749: hypothetical protein |
*
Staphylococcus capitis SK14 Site: position = -125 score = 5.26613 sequence = TATAGAACATATGTTCGCTA Gene: STACA0001_1989: hypothetical protein |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -127 score = 5.11699 sequence = AACAGAACGTATGTTCTGTT Gene: SE1627: hypothetical protein |
Gene: Sca_1509: hypothetical protein |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -129 score = 5.85527 sequence = AAACGAACAAATGTTCGCTT Gene: SH1018: hypothetical protein |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -135 score = 5.1209 sequence = AACAGAACGTGTGTTCGTAT Gene: SSP0853: hypothetical protein |
|
hypothetical protein |
| CRON 7. | ||||||||
| SA0684 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -124 score = 4.77392 sequence = CACAGAACGTTTGTTCGGTA Gene: SA0684: putative permease |
*
Staphylococcus capitis SK14 Site: position = -123 score = 4.81388 sequence = AACAGAACATGTGTTCGTGA Gene: STACA0001_0299: putative permease |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -116 score = 5.85527 sequence = AAGCGAACATTTGTTCGTTT Gene: SE0511: putative permease |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -126 score = 5.45041 sequence = AACAGAACATATGTTCGATT Gene: Sca_0377: putative permease |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -124 score = 5.58962 sequence = AACAGAACATTTGTTCGTAT Gene: SH2164: putative permease |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -125 score = 5.14437 sequence = TACAGAACATTTGTTCGTGT Gene: SSP1988: putative permease |
Gene: MCCL_0481: putative permease |
putative permease |
| SA0683 |
Gene: SA0683: 7-cyano-7-deazaguanine reductase |
Gene: STACA0001_0300: 7-cyano-7-deazaguanine reductase |
Gene: SE0510: 7-cyano-7-deazaguanine reductase |
Gene: Sca_0376: 7-cyano-7-deazaguanine reductase |
Gene: SH2165: 7-cyano-7-deazaguanine reductase |
Gene: SSP1989: 7-cyano-7-deazaguanine reductase |
Gene: MCCL_0480: 7-cyano-7-deazaguanine reductase |
7-cyano-7-deazaguanine reductase |
| CRON 8. | ||||||||
| recA |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -102 score = 5.37383 sequence = ATACGAACAAATATTCGCAA Site: position = -145 score = 5.08341 sequence = ATAAGCACGTTTGTTCGTTT Gene: SA1128: recombinase A |
*
Staphylococcus capitis SK14 Site: position = -103 score = 5.07845 sequence = ACACGAACAAATATTCGCAA Site: position = -146 score = 4.85405 sequence = ATAAGTACGTTTGTTCGATT Gene: STACA0001_2334: recombinase A |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -102 score = 5.37383 sequence = ATACGAACAAATATTCGCAA Site: position = -145 score = 5.08341 sequence = ATAAGTACGTTTGTTCGTTT Gene: SE0963: recombinase A |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -102 score = 4.98446 sequence = AATCGAACAAACATTCGCAA Gene: Sca_0926: recombinase A |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -105 score = 5.21492 sequence = AAGCGAACAAATATTCGCAA Gene: SH1628: recombinase A |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -104 score = 5.06506 sequence = TAGCGAACAAATATTCGCAA Gene: SSP1480: recombinase A |
*
Macrococcus caseolyticus JCSC5402 Site: position = -132 score = 5.22781 sequence = ATACAAACAGACGTTCGCAT Gene: MCCL_0875: recombinase A |
recombinase A |
| CRON 9. | ||||||||
| parE |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -32 score = 5.25698 sequence = AAACGAACGTACGTTTGCAG Gene: SA1188: DNA topoisomerase IV subunit B |
*
Staphylococcus capitis SK14 Site: position = -33 score = 5.3941 sequence = AAACGAACGTACGTTTGTAG Gene: STACA0001_1601: DNA topoisomerase IV subunit B |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -33 score = 5.24423 sequence = TAACGAACGTACGTTTGTAG Gene: SE1036: DNA topoisomerase IV subunit B |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -35 score = 5.38245 sequence = TAACGAACGTATGTTTGTAG Gene: Sca_0995: DNA topoisomerase IV subunit B |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -32 score = 5.3941 sequence = AAACGAACGTACGTTTGTAG Gene: SH1554: DNA topoisomerase IV subunit B |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -33 score = 5.3941 sequence = AAACGAACGTACGTTTGTAG Gene: SSP1404: DNA topoisomerase IV subunit B |
*
Macrococcus caseolyticus JCSC5402 Site: position = -31 score = 5.17488 sequence = TTTCGAACGTATGTTTGTAG Gene: MCCL_1011: DNA topoisomerase IV subunit B |
DNA topoisomerase IV subunit B |
| parC |
Gene: SA1189: DNA topoisomerase IV subunit A |
Gene: STACA0001_1602: DNA topoisomerase IV subunit A |
Gene: SE1037: DNA topoisomerase IV subunit A |
Gene: Sca_0996: DNA topoisomerase IV subunit A |
Gene: SH1553: DNA topoisomerase IV subunit A |
Gene: SSP1403: DNA topoisomerase IV subunit A |
Gene: MCCL_1012: DNA topoisomerase IV subunit A |
DNA topoisomerase IV subunit A |
| CRON 10. | ||||||||
| lexA |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -74 score = 5.6402 sequence = TAACGAACAAATGTTTGTTT Site: position = -132 score = 4.88366 sequence = CCTAGAACATTTGTTTGTAT Gene: SA1174: SOS regulatory LexA protein |
*
Staphylococcus capitis SK14 Site: position = -132 score = 4.74544 sequence = CCTAGAACGTTTGTTTGTAT Site: position = -103 score = 4.77359 sequence = ATCAGAACGAATGTTCTGTG Site: position = -74 score = 5.65185 sequence = AAACGAACAAACGTTTGTTT Gene: STACA0001_1582: SOS regulatory LexA protein |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -517 score = 4.88366 sequence = cctaGAACATtTGTTtGTAT Site: position = -459 score = 5.51212 sequence = tTACGAACAaATGTTtGTta Gene: SE1022: SOS regulatory LexA protein |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -132 score = 4.72333 sequence = CCCAGAACATTTGTTTGCAT Site: position = -103 score = 4.94909 sequence = ATCAGAACGATTGTTCGCTG Site: position = -74 score = 5.53391 sequence = TTACGAACAAATGTTTGTAA Gene: Sca_0980: SOS regulatory LexA protein |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -132 score = 4.98705 sequence = TCTAGAACATTTGTTTGTAT Site: position = -103 score = 4.83388 sequence = AACAGAACATCTGTTCTTAG Site: position = -74 score = 5.44237 sequence = AAACGAACAAATGTTTGTTC Gene: SH1568: SOS regulatory LexA protein |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -131 score = 4.74544 sequence = CCTAGAACGTTTGTTTGTAT Site: position = -102 score = 4.93502 sequence = ATCAGAACATTTGTTCTATG Site: position = -73 score = 5.52377 sequence = AAACGAACAAACGTTTGTAA Gene: SSP1418: SOS regulatory LexA protein |
*
Macrococcus caseolyticus JCSC5402 Site: position = -77 score = 5.66199 sequence = ATACGAACAAATGTTTGTTA Site: position = -135 score = 4.88366 sequence = CCTAGAACATTTGTTTGTAT Gene: MCCL_0995: SOS regulatory LexA protein |
SOS regulatory LexA protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |