Statistics of regulated genes

Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	16	10
Staphylococcus capitis SK14	16	10
Staphylococcus epidermidis ATCC 12228	16	10
Staphylococcus carnosus subsp. carnosus TM300	14	8
Staphylococcus haemolyticus JCSC1435	16	10
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	16	10
Macrococcus caseolyticus JCSC5402	8	6

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes								Function
CRON 1.
SA1738	* Staphylococcus aureus subsp. aureus N315 Site: position = -51 score = 5.25912 sequence = AACAGAACACATGTTCGTAT Gene: SA1738: SPBc2 prophage-derived uncharacterized protein	* Staphylococcus capitis SK14 Site: position = -52 score = 5.61283 sequence = AATAGAACAAATGTTCGTAT Gene: STACA0001_1975: SPBc2 prophage-derived uncharacterized protein	* Staphylococcus epidermidis ATCC 12228 Site: position = -52 score = 5.58962 sequence = AACAGAACAAATGTTCGTAT Gene: SE1605: SPBc2 prophage-derived uncharacterized protein	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -59 score = 5.28476 sequence = TAGCGAACAAGTGTTCGTAT Gene: Sca_1497: SPBc2 prophage-derived uncharacterized protein	* Staphylococcus haemolyticus JCSC1435 Site: position = -39 score = 5.43778 sequence = ATgCGAACATATGTTCtata Gene: SH0364: SPBc2 prophage-derived uncharacterized protein	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -51 score = 5.58655 sequence = AATAGAACGTATGTTCGTAT Gene: SSP0868: SPBc2 prophage-derived uncharacterized protein	* Macrococcus caseolyticus JCSC5402 Site: position = -34 score = 5.42512 sequence = AACAGAACGTACGTTCGTAT Gene: MCCL_1665: SPBc2 prophage-derived uncharacterized protein	SPBc2 prophage-derived uncharacterized protein
CRON 2.
uvrX	* Staphylococcus aureus subsp. aureus N315 Site: position = -79 score = 5.0384 sequence = AACAGAACATTTGTTCTAAA Site: position = -51 score = 4.8399 sequence = AATAGAACACGTGTTCGTAT Gene: SA1196: Putative UV-damage repair protein	* Staphylococcus capitis SK14 Site: position = -78 score = 5.00724 sequence = AATAGAACATTCGTTCTTGT Site: position = -49 score = 4.91905 sequence = ATAAGAACACGTGTTCTTAT Gene: STACA0001_1610: Putative UV-damage repair protein	* Staphylococcus epidermidis ATCC 12228 Site: position = -77 score = 5.69199 sequence = ATAAGAACAAATGTTCTTAT Site: position = -48 score = 4.66791 sequence = AATAGAACACGTGTTCTTAT Gene: SE1046: Putative UV-damage repair protein	*2 Staphylococcus carnosus subsp. carnosus TM300 Site: position = -82 score = 5.24598 sequence = AACAGAACATTTGTTCTTTA Site: position = -53 score = 5.72686 sequence = ATAAGAACAAATGTTCGCAT Gene: Sca_1008: Putative UV-damage repair protein Gene: Sca_1009: Putative UV-damage repair protein	* Staphylococcus haemolyticus JCSC1435 Site: position = -81 score = 4.94538 sequence = TAAAGAACATTAGTTCTTAT Site: position = -52 score = 5.84219 sequence = AAAAGAACAAATGTTCGTAT Gene: SH1545: Putative UV-damage repair protein	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -51 score = 5.61283 sequence = AATAGAACATTTGTTCGTAT Site: position = -80 score = 5.051 sequence = ATTGGAACATTTGTTCTTAT Gene: SSP1388: Putative UV-damage repair protein	* Macrococcus caseolyticus JCSC5402 Site: position = -10 score = 4.86661 sequence = AATAGAACGTATGTTCTGGT Site: position = -38 score = 5.41456 sequence = ATAAGAACATACGTTCTATT Gene: MCCL_1033: Putative UV-damage repair protein	Putative UV-damage repair protein
CRON 3.
uvrB	* Staphylococcus aureus subsp. aureus N315 Site: position = -107 score = 5.38665 sequence = TTACGAACAAACGTTTGCTT Gene: SA0713: excinuclease ABC subunit B	* Staphylococcus capitis SK14 Site: position = -126 score = 5.37762 sequence = AAGCGAACAAACGTTTGCTT Gene: STACA0001_0273: excinuclease ABC subunit B	* Staphylococcus epidermidis ATCC 12228 Site: position = -130 score = 5.67474 sequence = AAGCGAACAAATGTTTGTAT Gene: SE0541: excinuclease ABC subunit B	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -267 score = 4.76508 sequence = CTGCGAACAGATGTTTGTAC Gene: Sca_0407: excinuclease ABC subunit B	* Staphylococcus haemolyticus JCSC1435 Site: position = -266 score = 5.53652 sequence = AAGCGAACAAACGTTTGTAT Gene: SH2131: excinuclease ABC subunit B	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -176 score = 5.5586 sequence = CTACGAACAAATGTTTGTTT Gene: SSP1959: excinuclease ABC subunit B	* Macrococcus caseolyticus JCSC5402 Site: position = -67 score = 5.33608 sequence = TTACGAACAAATGTTTGTAC Gene: MCCL_0509: excinuclease ABC subunit B	excinuclease ABC subunit B
uvrA	Staphylococcus aureus subsp. aureus N315 Gene: SA0714: exinuclease ABC subunit A	Staphylococcus capitis SK14 Gene: STACA0001_0272: exinuclease ABC subunit A	Staphylococcus epidermidis ATCC 12228 Gene: SE0542: exinuclease ABC subunit A	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0408: exinuclease ABC subunit A	Staphylococcus haemolyticus JCSC1435 Gene: SH2130: exinuclease ABC subunit A	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1958: exinuclease ABC subunit A	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0510: exinuclease ABC subunit A	exinuclease ABC subunit A
CRON 4.
sbcD	* Staphylococcus aureus subsp. aureus N315 Site: position = -31 score = 5.30406 sequence = AAGCGAACAAATGTTCTATA Gene: SA1180: exonuclease SbcD	* Staphylococcus capitis SK14 Site: position = -33 score = 5.86398 sequence = ATACGAACAAATGTTCTTAT Gene: STACA0001_1593: exonuclease SbcD	* Staphylococcus epidermidis ATCC 12228 Site: position = -33 score = 5.70397 sequence = AAACGAACAAACGTTCTTAT Gene: SE1028: exonuclease SbcD	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0987: exonuclease SbcD	* Staphylococcus haemolyticus JCSC1435 Site: position = -31 score = 5.18937 sequence = ACACGAACAAATGTTCTAAA Gene: SH1562: exonuclease SbcD	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -33 score = 5.24314 sequence = ATACGAACAAACGTTCTAAG Gene: SSP1412: exonuclease SbcD	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1002: exonuclease SbcD	exonuclease SbcD
sbcC	Staphylococcus aureus subsp. aureus N315 Gene: SA1181: exonuclease SbcC	Staphylococcus capitis SK14 Gene: STACA0001_1594: exonuclease SbcC	Staphylococcus epidermidis ATCC 12228 Gene: SE1029: exonuclease SbcC	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0988: exonuclease SbcC	Staphylococcus haemolyticus JCSC1435 Gene: SH1561: exonuclease SbcC	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1411: exonuclease SbcC	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1003: exonuclease SbcC	exonuclease SbcC
CRON 5.
SA1975	* Staphylococcus aureus subsp. aureus N315 Site: position = -66 score = 4.92942 sequence = ACCCGAAAATATGTTCGTGT Gene: SA1975: predicted membrane-bound hydrolase	* Staphylococcus capitis SK14 Site: position = -65 score = 5.18025 sequence = ACACGAAAGTATGTTCGCTT Gene: STACA0001_1306: predicted membrane-bound hydrolase	* Staphylococcus epidermidis ATCC 12228 Site: position = -66 score = 5.14971 sequence = GTACGAAAGTATGTTCGCAT Gene: SE1762: predicted membrane-bound hydrolase	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -68 score = 5.12891 sequence = GACCGAAAATATGTTCGTTT Gene: Sca_1672: predicted membrane-bound hydrolase	* Staphylococcus haemolyticus JCSC1435 Site: position = -66 score = 5.24514 sequence = CACCGAAAATATGTTCGTAT Gene: SH0869: predicted membrane-bound hydrolase	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -66 score = 5.34754 sequence = TTACGAAAGTATGTTCGCAT Gene: SSP0715: predicted membrane-bound hydrolase	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0309: predicted membrane-bound hydrolase	predicted membrane-bound hydrolase
SA1974	Staphylococcus aureus subsp. aureus N315 Gene: SA1974: UDP-N-acetylglucosamine pyrophosphorylase	Staphylococcus capitis SK14 Gene: STACA0001_1307: UDP-N-acetylglucosamine pyrophosphorylase	Staphylococcus epidermidis ATCC 12228 Gene: SE1761: UDP-N-acetylglucosamine pyrophosphorylase	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1671: UDP-N-acetylglucosamine pyrophosphorylase	Staphylococcus haemolyticus JCSC1435 Gene: SH0870: UDP-N-acetylglucosamine pyrophosphorylase	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0716: UDP-N-acetylglucosamine pyrophosphorylase	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0310: UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase
SA1973	Staphylococcus aureus subsp. aureus N315 Gene: SA1973: hemolysin III	Staphylococcus capitis SK14 Gene: STACA0001_1308: hemolysin III	Staphylococcus epidermidis ATCC 12228 Gene: SE1760: hemolysin III	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1670: hemolysin III	Staphylococcus haemolyticus JCSC1435 Gene: SH0871: hemolysin III	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0717: hemolysin III	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1812: hemolysin III	hemolysin III
CRON 6.
SA1749	* Staphylococcus aureus subsp. aureus N315 Site: position = -133 score = 5.70156 sequence = AACAGAACATATGTTCGTAT Gene: SA1749: hypothetical protein	* Staphylococcus capitis SK14 Site: position = -125 score = 5.26613 sequence = TATAGAACATATGTTCGCTA Gene: STACA0001_1989: hypothetical protein	* Staphylococcus epidermidis ATCC 12228 Site: position = -127 score = 5.11699 sequence = AACAGAACGTATGTTCTGTT Gene: SE1627: hypothetical protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1509: hypothetical protein	* Staphylococcus haemolyticus JCSC1435 Site: position = -129 score = 5.85527 sequence = AAACGAACAAATGTTCGCTT Gene: SH1018: hypothetical protein	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -135 score = 5.1209 sequence = AACAGAACGTGTGTTCGTAT Gene: SSP0853: hypothetical protein	Macrococcus caseolyticus JCSC5402	hypothetical protein
CRON 7.
SA0684	* Staphylococcus aureus subsp. aureus N315 Site: position = -124 score = 4.77392 sequence = CACAGAACGTTTGTTCGGTA Gene: SA0684: putative permease	* Staphylococcus capitis SK14 Site: position = -123 score = 4.81388 sequence = AACAGAACATGTGTTCGTGA Gene: STACA0001_0299: putative permease	* Staphylococcus epidermidis ATCC 12228 Site: position = -116 score = 5.85527 sequence = AAGCGAACATTTGTTCGTTT Gene: SE0511: putative permease	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -126 score = 5.45041 sequence = AACAGAACATATGTTCGATT Gene: Sca_0377: putative permease	* Staphylococcus haemolyticus JCSC1435 Site: position = -124 score = 5.58962 sequence = AACAGAACATTTGTTCGTAT Gene: SH2164: putative permease	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -125 score = 5.14437 sequence = TACAGAACATTTGTTCGTGT Gene: SSP1988: putative permease	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0481: putative permease	putative permease
SA0683	Staphylococcus aureus subsp. aureus N315 Gene: SA0683: 7-cyano-7-deazaguanine reductase	Staphylococcus capitis SK14 Gene: STACA0001_0300: 7-cyano-7-deazaguanine reductase	Staphylococcus epidermidis ATCC 12228 Gene: SE0510: 7-cyano-7-deazaguanine reductase	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0376: 7-cyano-7-deazaguanine reductase	Staphylococcus haemolyticus JCSC1435 Gene: SH2165: 7-cyano-7-deazaguanine reductase	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1989: 7-cyano-7-deazaguanine reductase	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0480: 7-cyano-7-deazaguanine reductase	7-cyano-7-deazaguanine reductase
CRON 8.
recA	* Staphylococcus aureus subsp. aureus N315 Site: position = -102 score = 5.37383 sequence = ATACGAACAAATATTCGCAA Site: position = -145 score = 5.08341 sequence = ATAAGCACGTTTGTTCGTTT Gene: SA1128: recombinase A	* Staphylococcus capitis SK14 Site: position = -103 score = 5.07845 sequence = ACACGAACAAATATTCGCAA Site: position = -146 score = 4.85405 sequence = ATAAGTACGTTTGTTCGATT Gene: STACA0001_2334: recombinase A	* Staphylococcus epidermidis ATCC 12228 Site: position = -102 score = 5.37383 sequence = ATACGAACAAATATTCGCAA Site: position = -145 score = 5.08341 sequence = ATAAGTACGTTTGTTCGTTT Gene: SE0963: recombinase A	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -102 score = 4.98446 sequence = AATCGAACAAACATTCGCAA Gene: Sca_0926: recombinase A	* Staphylococcus haemolyticus JCSC1435 Site: position = -105 score = 5.21492 sequence = AAGCGAACAAATATTCGCAA Gene: SH1628: recombinase A	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -104 score = 5.06506 sequence = TAGCGAACAAATATTCGCAA Gene: SSP1480: recombinase A	* Macrococcus caseolyticus JCSC5402 Site: position = -132 score = 5.22781 sequence = ATACAAACAGACGTTCGCAT Gene: MCCL_0875: recombinase A	recombinase A
CRON 9.
parE	* Staphylococcus aureus subsp. aureus N315 Site: position = -32 score = 5.25698 sequence = AAACGAACGTACGTTTGCAG Gene: SA1188: DNA topoisomerase IV subunit B	* Staphylococcus capitis SK14 Site: position = -33 score = 5.3941 sequence = AAACGAACGTACGTTTGTAG Gene: STACA0001_1601: DNA topoisomerase IV subunit B	* Staphylococcus epidermidis ATCC 12228 Site: position = -33 score = 5.24423 sequence = TAACGAACGTACGTTTGTAG Gene: SE1036: DNA topoisomerase IV subunit B	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -35 score = 5.38245 sequence = TAACGAACGTATGTTTGTAG Gene: Sca_0995: DNA topoisomerase IV subunit B	* Staphylococcus haemolyticus JCSC1435 Site: position = -32 score = 5.3941 sequence = AAACGAACGTACGTTTGTAG Gene: SH1554: DNA topoisomerase IV subunit B	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -33 score = 5.3941 sequence = AAACGAACGTACGTTTGTAG Gene: SSP1404: DNA topoisomerase IV subunit B	* Macrococcus caseolyticus JCSC5402 Site: position = -31 score = 5.17488 sequence = TTTCGAACGTATGTTTGTAG Gene: MCCL_1011: DNA topoisomerase IV subunit B	DNA topoisomerase IV subunit B
parC	Staphylococcus aureus subsp. aureus N315 Gene: SA1189: DNA topoisomerase IV subunit A	Staphylococcus capitis SK14 Gene: STACA0001_1602: DNA topoisomerase IV subunit A	Staphylococcus epidermidis ATCC 12228 Gene: SE1037: DNA topoisomerase IV subunit A	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0996: DNA topoisomerase IV subunit A	Staphylococcus haemolyticus JCSC1435 Gene: SH1553: DNA topoisomerase IV subunit A	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1403: DNA topoisomerase IV subunit A	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1012: DNA topoisomerase IV subunit A	DNA topoisomerase IV subunit A
CRON 10.
lexA	* Staphylococcus aureus subsp. aureus N315 Site: position = -74 score = 5.6402 sequence = TAACGAACAAATGTTTGTTT Site: position = -132 score = 4.88366 sequence = CCTAGAACATTTGTTTGTAT Gene: SA1174: SOS regulatory LexA protein	* Staphylococcus capitis SK14 Site: position = -132 score = 4.74544 sequence = CCTAGAACGTTTGTTTGTAT Site: position = -103 score = 4.77359 sequence = ATCAGAACGAATGTTCTGTG Site: position = -74 score = 5.65185 sequence = AAACGAACAAACGTTTGTTT Gene: STACA0001_1582: SOS regulatory LexA protein	* Staphylococcus epidermidis ATCC 12228 Site: position = -517 score = 4.88366 sequence = cctaGAACATtTGTTtGTAT Site: position = -459 score = 5.51212 sequence = tTACGAACAaATGTTtGTta Gene: SE1022: SOS regulatory LexA protein	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -132 score = 4.72333 sequence = CCCAGAACATTTGTTTGCAT Site: position = -103 score = 4.94909 sequence = ATCAGAACGATTGTTCGCTG Site: position = -74 score = 5.53391 sequence = TTACGAACAAATGTTTGTAA Gene: Sca_0980: SOS regulatory LexA protein	* Staphylococcus haemolyticus JCSC1435 Site: position = -132 score = 4.98705 sequence = TCTAGAACATTTGTTTGTAT Site: position = -103 score = 4.83388 sequence = AACAGAACATCTGTTCTTAG Site: position = -74 score = 5.44237 sequence = AAACGAACAAATGTTTGTTC Gene: SH1568: SOS regulatory LexA protein	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -131 score = 4.74544 sequence = CCTAGAACGTTTGTTTGTAT Site: position = -102 score = 4.93502 sequence = ATCAGAACATTTGTTCTATG Site: position = -73 score = 5.52377 sequence = AAACGAACAAACGTTTGTAA Gene: SSP1418: SOS regulatory LexA protein	* Macrococcus caseolyticus JCSC5402 Site: position = -77 score = 5.66199 sequence = ATACGAACAAATGTTTGTTA Site: position = -135 score = 4.88366 sequence = CCTAGAACATTTGTTTGTAT Gene: MCCL_0995: SOS regulatory LexA protein	SOS regulatory LexA protein

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