Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PtsR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbohydrate metabolism
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium longum subsp. infantis ATCC 15697 3 2
Bifidobacterium adolescentis ATCC 15703 1 1
Bifidobacterium angulatum DSM 20098 2 2
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171 3 2
Bifidobacterium breve DSM 20213 3 2
Bifidobacterium dentium Bd1 3 2
Bifidobacterium gallicum DSM 20093 2 2
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hpr
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -112
score = 5.85099
sequence = AACGGTAATCGTTTTCTGGA

Gene: Blon_0177: Phosphotransferase system, phosphocarrier HPr protein
 
Bifidobacterium adolescentis ATCC 15703
*
Bifidobacterium angulatum DSM 20098

Site:
position = -116
score = 6.09672
sequence = AACAGTAAACGTTTTCCGTG

Gene: BIFANG_00109: Phosphotransferase system, phosphocarrier HPr protein
 
Bifidobacterium animalis subsp. lactis AD011
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -214
score = 5.31632
sequence = AGAAGTAAACGTTTTCCAGA

Gene: BbifN4_010100006903: Phosphotransferase system, phosphocarrier HPr protein
*
Bifidobacterium breve DSM 20213

Site:
position = -74
score = 5.85099
sequence = AACGGTAATCGTTTTCTGGA

Gene: BIFBRE_01976: Phosphotransferase system, phosphocarrier HPr protein
*
Bifidobacterium dentium Bd1

Site:
position = -130
score = 5.76935
sequence = AAAGGAAAACGTTTTCTGCG

Gene: BDP_0253: Phosphotransferase system, phosphocarrier HPr protein
*
Bifidobacterium gallicum DSM 20093

Site:
position = -234
score = 5.40572
sequence = AGCGGTAATCGTTTTCTAGG

Gene: BIFGAL_00155: Phosphotransferase system, phosphocarrier HPr protein
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_1269: Phosphotransferase system, phosphocarrier HPr protein
Phosphotransferase system, phosphocarrier HPr protein
ptsR
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0176: Transcriptional regulator of general components of PTS, LacI family
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0164: Transcriptional regulator of general components of PTS, LacI family
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00110: Transcriptional regulator of general components of PTS, LacI family
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100006898: Transcriptional regulator of general components of PTS, LacI family
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_01975: Transcriptional regulator of general components of PTS, LacI family
 
Bifidobacterium dentium Bd1

Gene: BDP_0252: Transcriptional regulator of general components of PTS, LacI family
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00153: Transcriptional regulator of general components of PTS, LacI family
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Transcriptional regulator of general components of PTS, LacI family
 
CRON 2.
ptsI
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -164
score = 5.85099
sequence = TCCAGAAAACGATTACCGTT

Gene: Blon_0178: PTS system, enzyme I
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -138
score = 6.04849
sequence = CACAGAAAACGTTTACCGGT

Gene: BAD_0166: PTS system, enzyme I
*
Bifidobacterium angulatum DSM 20098

Site:
position = -185
score = 6.09672
sequence = CACGGAAAACGTTTACTGTT

Gene: BIFANG_00108: PTS system, enzyme I
 
Bifidobacterium animalis subsp. lactis AD011
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -162
score = 5.31632
sequence = TCTGGAAAACGTTTACTTCT

Gene: BbifN4_010100006908: PTS system, enzyme I
*
Bifidobacterium breve DSM 20213

Site:
position = -164
score = 5.85099
sequence = TCCAGAAAACGATTACCGTT

Gene: BIFBRE_01978: PTS system, enzyme I
*
Bifidobacterium dentium Bd1

Site:
position = -174
score = 5.76935
sequence = CGCAGAAAACGTTTTCCTTT

Gene: BDP_0254: PTS system, enzyme I
*
Bifidobacterium gallicum DSM 20093

Site:
position = -255
score = 5.40572
sequence = CCTAGAAAACGATTACCGCT

Gene: BIFGAL_00157: PTS system, enzyme I
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_1268: PTS system, enzyme I
PTS system, enzyme I
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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