Regulog BDP_2100 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Carbohydrate metabolism
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Carbohydrate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213	5	1
Bifidobacterium dentium Bd1	5	2
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
BDP_2099	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -46 score = 6.98118 sequence = GAAAATAAACGTTTAGCATA Gene: BDP_2099: Anhydro-N-acetylmuramic acid kinase	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Anhydro-N-acetylmuramic acid kinase
BDP_2098	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2098: ABC-type sugar transport system, ATPase component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transport system, ATPase component
BDP_2097	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2097: ABC-type sugar transport system, permease component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transport system, permease component
BDP_2096	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2096: ABC-type sugar transport system, substrate-binding component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transport system, substrate-binding component

CRON 2.
BIFBRE_00641	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	* Bifidobacterium breve DSM 20213 Site: position = -22 score = 6.72955 sequence = AAAAATAAACGTTTAGGATT Gene: BIFBRE_00641: Transcriptional regulator, LacI family	* Bifidobacterium dentium Bd1 Site: position = -86 score = 4.62989 sequence = CATGCTAAACGTTTGTGATA Site: position = -57 score = 6.47792 sequence = CATCACAAACGTTTAGCAAA Gene: BDP_2100: Transcriptional regulator, LacI family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Transcriptional regulator, LacI family
BIFBRE_00642	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00642: ABC-type transport system, substrate-binding component	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type transport system, substrate-binding component
BIFBRE_00643	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00643: ABC-type transport system, ATPase component	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type transport system, ATPase component
BIFBRE_00644	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00644: ABC-type transport system, permease component	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type transport system, permease component
BIFBRE_00645	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00645: hypothetical protein	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BDP_2100 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --