Regulog AraQ - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Central carbohydrate metabolism; Arabinose utilization; Arabinose oligosaccharide utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By pathway - Central carbohydrate metabolism
- By pathway - Arabinose utilization
- By pathway - Arabinose oligosaccharide utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | 16 | 12 |
| Bifidobacterium adolescentis ATCC 15703 | 14 | 10 |
| Bifidobacterium angulatum DSM 20098 | 8 | 5 |
| Bifidobacterium animalis subsp. lactis AD011 | 5 | 3 |
| Bifidobacterium bifidum NCIMB 41171 | 13 | 9 |
| Bifidobacterium breve DSM 20213 | 15 | 11 |
| Bifidobacterium dentium Bd1 | 12 | 9 |
| Bifidobacterium gallicum DSM 20093 | 5 | 3 |
| Bifidobacterium longum NCC2705 | 19 | 13 |
| Gardnerella vaginalis 409-05 | 3 | 3 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| eno |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -108 score = 5.96145 sequence = CATTGTGAGCGCTAACACTA Gene: Blon_1836: Enolase (EC 4.2.1.11) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -106 score = 5.2918 sequence = GAGTGTGAGCGTTCACATGG Gene: BAD_0645: Enolase (EC 4.2.1.11) |
Gene: BIFANG_01071: Enolase (EC 4.2.1.11) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -104 score = 5.18325 sequence = TCGTGGGAGCGCTCACATTT Gene: BLA_1030: Enolase (EC 4.2.1.11) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -105 score = 5.32738 sequence = GAATGTTAGCGCTCATATTA Gene: BbifN4_010100003174: Enolase (EC 4.2.1.11) |
*
Bifidobacterium breve DSM 20213 Site: position = -108 score = 6.1265 sequence = CATTGTGAGCGCTCACATCA Gene: BIFBRE_01016: Enolase (EC 4.2.1.11) |
*
Bifidobacterium dentium Bd1 Site: position = -106 score = 5.48783 sequence = GTATGTGAGCGTTCACATGA Gene: BDP_0870: Enolase (EC 4.2.1.11) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -104 score = 4.47569 sequence = ACATGTGAACACTCACTGCA Gene: BIFGAL_01223: Enolase (EC 4.2.1.11) |
*
Bifidobacterium longum NCC2705 Site: position = -108 score = 5.64402 sequence = CATTGTGAGCGCTAACGCTA Gene: BL1022: Enolase (EC 4.2.1.11) |
*
Gardnerella vaginalis 409-05 Site: position = -106 score = 5.28629 sequence = TATTGTGAACGTTCACGGCA Gene: HMPREF0424_0662: Enolase (EC 4.2.1.11) |
Enolase (EC 4.2.1.11) |
| CRON 2. | |||||||||||
| araQ |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -110 score = 5.46808 sequence = CAGTGTGAGCGCTAACGCAA Gene: Blon_0423: Transcriptional regulator of central carbohydrate metabolism, LacI family |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -75 score = 5.42377 sequence = GGTTGTTAGCGCTAACTGAA Gene: BAD_1413: Transcriptional regulator of central carbohydrate metabolism, LacI family |
Gene: BIFANG_00190: Transcriptional regulator of central carbohydrate metabolism, LacI family |
Gene: BLA_0050: Transcriptional regulator of central carbohydrate metabolism, LacI family |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -122 score = 5.42384 sequence = ATCTGTGAGCGCTCACGCGT Gene: BbifN4_010100001372: Transcriptional regulator of central carbohydrate metabolism, LacI family |
*
Bifidobacterium breve DSM 20213 Site: position = -146 score = 5.43068 sequence = CAATGTGAGCGCTCACGCGA Gene: BIFBRE_02212: Transcriptional regulator of central carbohydrate metabolism, LacI family |
*
Bifidobacterium dentium Bd1 Site: position = -75 score = 5.1259 sequence = GCCTGTTAGCGCTAACTGAA Gene: BDP_1926: Transcriptional regulator of central carbohydrate metabolism, LacI family |
Gene: BIFGAL_00652: Transcriptional regulator of central carbohydrate metabolism, LacI family |
*
Bifidobacterium longum NCC2705 Site: position = -71 score = 5.46808 sequence = CAGTGTGAGCGCTAACGCAA Gene: BL0275: Transcriptional regulator of central carbohydrate metabolism, LacI family |
Gene: HMPREF0424_0351: Transcriptional regulator of central carbohydrate metabolism, LacI family |
Transcriptional regulator of central carbohydrate metabolism, LacI family |
| CRON 3. | |||||||||||
| glgB |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -108 score = 5.3485 sequence = CTATGAGAGCGCTCACAACC Gene: Blon_1761: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
Gene: BAD_0667: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
Gene: BIFANG_01130: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
Gene: BLA_1505: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
Gene: BbifN4_010100003289: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
*
Bifidobacterium breve DSM 20213 Site: position = -108 score = 5.42046 sequence = CAATGAGAGCGCTCACAATC Gene: BIFBRE_01039: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
Gene: BDP_0893: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
Gene: BIFGAL_00368: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
*
Bifidobacterium longum NCC2705 Site: position = -147 score = 5.3485 sequence = CTATGAGAGCGCTCACAACC Gene: BL0999: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
Gene: HMPREF0424_0597: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) |
| Blon_1762 |
Gene: Blon_1762: response regulator of two-component system |
Gene: BAD_0666: response regulator of two-component system |
Gene: BIFANG_01129: response regulator of two-component system |
Gene: BLA_1506: response regulator of two-component system |
Gene: BbifN4_010100003284: response regulator of two-component system |
Gene: BIFBRE_01038: response regulator of two-component system |
Gene: BDP_0892: response regulator of two-component system |
Gene: BIFGAL_00369: response regulator of two-component system |
Gene: BL1000: response regulator of two-component system |
Gene: HMPREF0424_0596: response regulator of two-component system |
response regulator of two-component system |
| Blon_1763 |
Gene: Blon_1763: histidine kinase sensor of two-component system |
Gene: BAD_0665: histidine kinase sensor of two-component system |
Gene: BIFANG_01128: histidine kinase sensor of two-component system |
Gene: BLA_1507: histidine kinase sensor of two-component system |
Gene: BbifN4_010100003279: histidine kinase sensor of two-component system |
Gene: BIFBRE_01037: histidine kinase sensor of two-component system |
Gene: BDP_0891: histidine kinase sensor of two-component system |
Gene: BIFGAL_00370: histidine kinase sensor of two-component system |
Gene: BL1001: histidine kinase sensor of two-component system |
Gene: HMPREF0424_0594: histidine kinase sensor of two-component system |
histidine kinase sensor of two-component system |
| CRON 4. | |||||||||||
| tkt |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -156 score = 5.29383 sequence = CACTGTGAACGTTAACAGAA Gene: Blon_1096: Transketolase (EC 2.2.1.1) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -156 score = 6.05322 sequence = AATTGTGAGCGCTAACAGCA Gene: BAD_0829: Transketolase (EC 2.2.1.1) |
*2
Bifidobacterium angulatum DSM 20098 Site: position = -166 score = 4.73793 sequence = AAACGAGAACGCTAACAGAA Gene: BIFANG_01436: Transketolase (EC 2.2.1.1) Gene: BIFANG_01437: Transketolase (EC 2.2.1.1) |
Gene: BLA_1357: Transketolase (EC 2.2.1.1) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -159 score = 5.8219 sequence = ACTTGTGAGCGCTAACATAA Gene: BbifN4_010100004774: Transketolase (EC 2.2.1.1) |
*
Bifidobacterium breve DSM 20213 Site: position = -156 score = 5.76995 sequence = AATTGTGAACGCTAACAGAA Gene: BIFBRE_01332: Transketolase (EC 2.2.1.1) |
*
Bifidobacterium dentium Bd1 Site: position = -157 score = 5.70118 sequence = CATTGTGAACGCTAACAGAA Gene: BDP_1145: Transketolase (EC 2.2.1.1) |
Gene: BIFGAL_01683: Transketolase (EC 2.2.1.1) |
*
Bifidobacterium longum NCC2705 Site: position = -156 score = 5.6202 sequence = CACTGTGAACGCTAACAGAA Gene: BL0716: Transketolase (EC 2.2.1.1) |
Gene: HMPREF0424_0902: Transketolase (EC 2.2.1.1) |
Transketolase (EC 2.2.1.1) |
| tal |
Gene: Blon_1095: Transaldolase (EC 2.2.1.2) |
Gene: BAD_0830: Transaldolase (EC 2.2.1.2) |
Gene: BIFANG_01438: Transaldolase (EC 2.2.1.2) |
Gene: BLA_1358: Transaldolase (EC 2.2.1.2) |
Gene: BbifN4_010100004779: Transaldolase (EC 2.2.1.2) |
Gene: BIFBRE_01331: Transaldolase (EC 2.2.1.2) |
Gene: BDP_1144: Transaldolase (EC 2.2.1.2) |
Gene: BIFGAL_01684: Transaldolase (EC 2.2.1.2) |
Gene: BL0715: Transaldolase (EC 2.2.1.2) |
Gene: HMPREF0424_0903: Transaldolase (EC 2.2.1.2) |
Transaldolase (EC 2.2.1.2) |
| CRON 5. | |||||||||||
| gap |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -155 score = 6.31934 sequence = AATTGTGAGCGCTCACAAAA Gene: Blon_0900: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -156 score = 5.08363 sequence = GCATGTGAGCGTTCACTGAA Gene: BAD_1079: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
Gene: BIFANG_01637: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
Gene: BLA_0740: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -155 score = 5.29604 sequence = ATTTGTTAGCGTTAACGGAA Gene: BbifN4_010100002494: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Bifidobacterium breve DSM 20213 Site: position = -155 score = 6.16959 sequence = CAATGTGAGCGCTCACAAAA Gene: BIFBRE_01690: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Bifidobacterium dentium Bd1 Site: position = -156 score = 5.5258 sequence = CATTGTGAGCGTTCACGGAA Gene: BDP_1514: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
Gene: BIFGAL_00267: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Bifidobacterium longum NCC2705 Site: position = -155 score = 6.23836 sequence = AATTGTGAGCGCTCACAGAA Gene: BL1363: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Gardnerella vaginalis 409-05 Site: position = -161 score = 4.89485 sequence = GCATGTTAACGCTCACTGTT Gene: HMPREF0424_0471: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
| CRON 6. | |||||||||||
| ldh |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -160 score = 5.28743 sequence = GTTTGGGAGCGCTAACAACC Gene: Blon_0840: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -23 score = 6.15515 sequence = GTATGTGAGCGCTCACAAAA Gene: BAD_1117: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -102 score = 4.7004 sequence = CGATGTGAGCGCTGCCAGTG Gene: BIFANG_00987: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: BLA_0792: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -163 score = 5.7857 sequence = GTCTGTGAGCGTTCACAACA Gene: BbifN4_010100002254: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Bifidobacterium breve DSM 20213 Site: position = -160 score = 5.86575 sequence = GGCTGTGAGCGCTAACAACT Gene: BIFBRE_01807: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Bifidobacterium dentium Bd1 Site: position = -162 score = 6.11206 sequence = GTTTGTGAGCGCTCACATCA Gene: BDP_1558: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: BIFGAL_00305: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Bifidobacterium longum NCC2705 Site: position = -160 score = 5.6724 sequence = ATTCGTGAGCGCTAACAACC Gene: BL1308: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: HMPREF0424_0584: L-lactate dehydrogenase (EC 1.1.1.27) |
L-lactate dehydrogenase (EC 1.1.1.27) |
| CRON 7. | |||||||||||
| galM |
*2
Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0897: Aldose 1-epimerase (EC 5.1.3.3) Site: position = -43 score = 5.3759 sequence = GATTGTGAGCGGTAACAATC Gene: Blon_0896: Aldose 1-epimerase (EC 5.1.3.3) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -57 score = 4.96306 sequence = CATCGTGAGCGGTAACATAG Gene: BAD_1082: Aldose 1-epimerase (EC 5.1.3.3) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -51 score = 5.06915 sequence = ATGTGTTAGCGGTAACAACC Gene: BIFANG_01641: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: BLA_0743: Aldose 1-epimerase (EC 5.1.3.3) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -44 score = 4.46802 sequence = GATAGCGAGCGGTAACAATA Gene: BbifN4_010100002474: Aldose 1-epimerase (EC 5.1.3.3) |
*2
Bifidobacterium breve DSM 20213 Gene: BIFBRE_01693: Aldose 1-epimerase (EC 5.1.3.3) Site: position = -44 score = 4.87222 sequence = GATTGCGAGCGGTAACAATA Gene: BIFBRE_01694: Aldose 1-epimerase (EC 5.1.3.3) |
*
Bifidobacterium dentium Bd1 Site: position = -56 score = 4.77792 sequence = GACCGTTAGCGGTAACAACC Gene: BDP_1518: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: BIFGAL_00270: Aldose 1-epimerase (EC 5.1.3.3) |
*2
Bifidobacterium longum NCC2705 Gene: BL1360: Aldose 1-epimerase (EC 5.1.3.3) Site: position = -43 score = 5.44467 sequence = GATTGTGAGCGATAACAATT Gene: BL1359: Aldose 1-epimerase (EC 5.1.3.3) |
|
Aldose 1-epimerase (EC 5.1.3.3) |
| CRON 8. | |||||||||||
| araE |
|
|
*
Bifidobacterium angulatum DSM 20098 Site: position = -347 score = 5.28202 sequence = TTTTGAGAGCGTTCACATCA Site: position = -176 score = 5.35149 sequence = AAATGTGAGCGATAACATTT Gene: BIFANG_00188: L-arabinose-proton symporter |
|
|
|
|
|
|
|
L-arabinose-proton symporter |
| araB |
|
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -82 score = 5.25024 sequence = AATAGTGAGCGTTAACAGTG Site: position = -69 score = 5.49563 sequence = AACAGTGAGCGCTAACATTC Gene: BAD_1412: Ribulokinase (EC 2.7.1.16) |
Gene: BIFANG_00187: Ribulokinase (EC 2.7.1.16) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -70 score = 5.92037 sequence = TTGTGTGAGCGCTAACATAT Site: position = -213 score = 5.00598 sequence = TCATGTTACCGCTCACAAGA Gene: BLA_0056: Ribulokinase (EC 2.7.1.16) |
|
|
*
Bifidobacterium dentium Bd1 Site: position = -81 score = 5.25024 sequence = AATAGTGAGCGTTAACAGTG Site: position = -68 score = 5.49563 sequence = AACAGTGAGCGCTAACATTC Gene: BDP_1924: Ribulokinase (EC 2.7.1.16) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -2 score = 5.74335 sequence = AAATGTTAGCGCTAACATAC Gene: BIFGAL_00651: Ribulokinase (EC 2.7.1.16) |
*
Bifidobacterium longum NCC2705 Site: position = -70 score = 5.84275 sequence = AATTGTGAGCGCTAACACCC Gene: BL0274: Ribulokinase (EC 2.7.1.16) |
|
Ribulokinase (EC 2.7.1.16) |
| araD |
|
Gene: BAD_1411: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: BIFANG_00186: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: BLA_0057: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: BbifN4_010100001352: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
|
Gene: BDP_1923: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: BIFGAL_00650: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: BL0273: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
|
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
| araA |
|
Gene: BAD_1410: L-arabinose isomerase (EC 5.3.1.4) |
Gene: BIFANG_00185: L-arabinose isomerase (EC 5.3.1.4) |
Gene: BLA_0058: L-arabinose isomerase (EC 5.3.1.4) |
|
|
Gene: BDP_1922: L-arabinose isomerase (EC 5.3.1.4) |
Gene: BIFGAL_00649: L-arabinose isomerase (EC 5.3.1.4) |
Gene: BL0272: L-arabinose isomerase (EC 5.3.1.4) |
|
L-arabinose isomerase (EC 5.3.1.4) |
| gatC |
|
|
|
|
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -238 score = 5.54357 sequence = ATATGTGAGCGCTCCCAATT Gene: BbifN4_010100001337: putative PTS system, galactitol-specific IIC component |
|
|
|
|
|
putative PTS system, galactitol-specific IIC component |
| lyxK |
|
|
|
|
Gene: BbifN4_010100001342: L-xylulose kinase (EC 2.7.1.-) |
|
|
|
|
|
L-xylulose kinase (EC 2.7.1.-) |
| sgaU |
|
|
|
|
Gene: BbifN4_010100001347: L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) |
|
|
|
|
|
L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) |
| CRON 9. | |||||||||||
| sgaR |
|
|
|
|
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -130 score = 5.54357 sequence = AATTGGGAGCGCTCACATAT Gene: BbifN4_010100001332: Putative transcriptional regulator of L-ascorbate utilization, SorC family |
|
|
|
|
|
Putative transcriptional regulator of L-ascorbate utilization, SorC family |
| CRON 10. | |||||||||||
| pyk |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -127 score = 6.1265 sequence = CAATGTGAGCGCTCACAACA Gene: Blon_1745: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -51 score = 6.27625 sequence = AATTGTGAGCGCTCACAACA Gene: BAD_0678: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -131 score = 6.09631 sequence = AATTGTTAGCGCTCACATAA Gene: BIFANG_01141: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -380 score = 5.98212 sequence = GGTTGTGAGCGCTCACAGAC Gene: BLA_1494: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -131 score = 6.13774 sequence = AGATGTGAGCGCTCACAACA Gene: BbifN4_010100003349: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium breve DSM 20213 Site: position = -77 score = 6.04597 sequence = CAGTGTGAGCGCTCACAACA Gene: BIFBRE_01051: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium dentium Bd1 Site: position = -126 score = 6.19527 sequence = AAATGTGAGCGCTCACAACA Gene: BDP_0904: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -125 score = 5.5016 sequence = CTATGTTAACGCTAACAACA Gene: BIFGAL_00353: Pyruvate kinase (EC 2.7.1.40) |
*
Bifidobacterium longum NCC2705 Site: position = -40 score = 6.1265 sequence = CAATGTGAGCGCTCACAACA Gene: BL0988: Pyruvate kinase (EC 2.7.1.40) |
*
Gardnerella vaginalis 409-05 Site: position = -146 score = 5.95873 sequence = TTCTGTGAGCGTTCACAAAA Gene: HMPREF0424_0607: Pyruvate kinase (EC 2.7.1.40) |
Pyruvate kinase (EC 2.7.1.40) |
| CRON 11. | |||||||||||
| PF07944 |
|
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -49 score = 5.52218 sequence = GATTGTGAGCGTTAACAAGA Gene: BAD_1529: Putative glycosyl hydrolase of unknown function (DUF1680) |
|
|
|
|
Gene: BDP_2104: Putative glycosyl hydrolase of unknown function (DUF1680) |
|
Gene: BL0174: Putative glycosyl hydrolase of unknown function (DUF1680) |
|
Putative glycosyl hydrolase of unknown function (DUF1680) |
| aga |
|
Gene: BAD_1528: Alpha-galactosidase (EC 3.2.1.22) |
|
Gene: BLA_0881: Alpha-galactosidase (EC 3.2.1.22) |
|
|
Gene: BDP_2102: Alpha-galactosidase (EC 3.2.1.22) |
|
|
|
Alpha-galactosidase (EC 3.2.1.22) |
| CRON 12. | |||||||||||
| maa |
|
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -20 score = 5.44535 sequence = TGGTGTGAGCGTTCACTATA Gene: BAD_0431: Maltose O-acetyltransferase (EC 2.3.1.79) |
|
|
|
|
*
Bifidobacterium dentium Bd1 Site: position = -49 score = 5.51768 sequence = TTGCGTGAACGCTCACAACA Gene: BDP_0569: Maltose O-acetyltransferase (EC 2.3.1.79) |
Gene: BIFGAL_00985: Maltose O-acetyltransferase (EC 2.3.1.79) |
|
|
Maltose O-acetyltransferase (EC 2.3.1.79) |
| CRON 13. | |||||||||||
| malQ1 |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -110 score = 6.06533 sequence = CATTGTGAGCGCTCACATCT Site: position = -88 score = 4.59879 sequence = CTGTGTGAGGGCTAAAAGTA Gene: Blon_2246: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
Gene: BAD_0308: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
Gene: BIFANG_00703: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
Gene: BLA_0353: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
Gene: BbifN4_010100007712: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
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Gene: BDP_0418: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
Gene: BIFGAL_00789: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
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Bifidobacterium longum NCC2705 Site: position = -110 score = 6.06533 sequence = CATTGTGAGCGCTCACATCT Gene: BL1570: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
Gene: HMPREF0424_0251: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
| CRON 14. | |||||||||||
| birA |
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Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -107 score = 4.91561 sequence = AGTTGTGAACGTTAACACGG Gene: Blon_2288: Biotin-protein ligase (EC 6.3.4.15) |
Gene: BAD_0251: Biotin-protein ligase (EC 6.3.4.15) |
Gene: BIFANG_00241: Biotin-protein ligase (EC 6.3.4.15) |
Gene: BLA_0298: Biotin-protein ligase (EC 6.3.4.15) |
2
Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100007402: Biotin-protein ligase (EC 6.3.4.15) Gene: BbifN4_010100007372: Biotin-protein ligase (EC 6.3.4.15) |
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Bifidobacterium breve DSM 20213 Site: position = -107 score = 5.22251 sequence = ACGTGTGAGCGTTCACACCG Gene: BIFBRE_00166: Biotin-protein ligase (EC 6.3.4.15) |
Gene: BDP_0358: Biotin-protein ligase (EC 6.3.4.15) |
2
Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00711: Biotin-protein ligase (EC 6.3.4.15) Gene: BIFGAL_00710: Biotin-protein ligase (EC 6.3.4.15) |
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Bifidobacterium longum NCC2705 Site: position = -45 score = 4.99614 sequence = AGTTGTGAACGTTAACATGG Gene: BL1533: Biotin-protein ligase (EC 6.3.4.15) |
Gene: HMPREF0424_1201: Biotin-protein ligase (EC 6.3.4.15) |
Biotin-protein ligase (EC 6.3.4.15) |
| CRON 15. | |||||||||||
| Blon_2289 |
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Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -144 score = 4.91561 sequence = CCGTGTTAACGTTCACAACT Gene: Blon_2289: hypothetical protein |
Gene: BAD_0250: hypothetical protein |
Gene: BIFANG_00391: hypothetical protein |
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Gene: BbifN4_010100007367: hypothetical protein |
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Bifidobacterium breve DSM 20213 Site: position = -213 score = 5.22251 sequence = CGGTGTGAACGCTCACACGT Gene: BIFBRE_00165: hypothetical protein |
Gene: BDP_0356: hypothetical protein |
Gene: BIFGAL_00707: hypothetical protein |
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Bifidobacterium longum NCC2705 Site: position = -123 score = 4.99614 sequence = CCATGTTAACGTTCACAACT Gene: BL1532: hypothetical protein |
Gene: HMPREF0424_1202: hypothetical protein |
hypothetical protein |
| Blon_2290 |
Gene: Blon_2290: Regulator of polyketide synthase expression |
Gene: BAD_0249: Regulator of polyketide synthase expression |
Gene: BIFANG_00390: Regulator of polyketide synthase expression |
Gene: BLA_0297: Regulator of polyketide synthase expression |
Gene: BbifN4_010100007362: Regulator of polyketide synthase expression |
Gene: BIFBRE_00164: Regulator of polyketide synthase expression |
Gene: BDP_0355: Regulator of polyketide synthase expression |
Gene: BIFGAL_00705: Regulator of polyketide synthase expression |
Gene: BL1531: Regulator of polyketide synthase expression |
Gene: HMPREF0424_1203: Regulator of polyketide synthase expression |
Regulator of polyketide synthase expression |
| CRON 16. | |||||||||||
| malE |
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Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -227 score = 5.1073 sequence = ATATGTTAGCGCTCTCATGA Gene: Blon_2444: Maltose/maltodextrin ABC transporter, substrate binding protein |
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Bifidobacterium breve DSM 20213 Site: position = -229 score = 4.92302 sequence = GCATGTTAGCGCTCTCATTG Gene: BIFBRE_00012: Maltose/maltodextrin ABC transporter, substrate binding protein |
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Bifidobacterium longum NCC2705 Site: position = -246 score = 5.36728 sequence = ATATGTTAGCGCTCTCATAA Gene: BL0141: Maltose/maltodextrin ABC transporter, substrate binding protein |
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Maltose/maltodextrin ABC transporter, substrate binding protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |