Regulog AraQ - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Central carbohydrate metabolism; Arabinose utilization; Arabinose oligosaccharide utilization
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 83 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Central carbohydrate metabolism
By pathway - Arabinose utilization
By pathway - Arabinose oligosaccharide utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697	16	12
Bifidobacterium adolescentis ATCC 15703	14	10
Bifidobacterium angulatum DSM 20098	8	5
Bifidobacterium animalis subsp. lactis AD011	5	3
Bifidobacterium bifidum NCIMB 41171	13	9
Bifidobacterium breve DSM 20213	15	11
Bifidobacterium dentium Bd1	12	9
Bifidobacterium gallicum DSM 20093	5	3
Bifidobacterium longum NCC2705	19	13
Gardnerella vaginalis 409-05	3	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
eno	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -108 score = 5.96145 sequence = CATTGTGAGCGCTAACACTA Gene: Blon_1836: Enolase (EC 4.2.1.11)	* Bifidobacterium adolescentis ATCC 15703 Site: position = -106 score = 5.2918 sequence = GAGTGTGAGCGTTCACATGG Gene: BAD_0645: Enolase (EC 4.2.1.11)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01071: Enolase (EC 4.2.1.11)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -104 score = 5.18325 sequence = TCGTGGGAGCGCTCACATTT Gene: BLA_1030: Enolase (EC 4.2.1.11)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -105 score = 5.32738 sequence = GAATGTTAGCGCTCATATTA Gene: BbifN4_010100003174: Enolase (EC 4.2.1.11)	* Bifidobacterium breve DSM 20213 Site: position = -108 score = 6.1265 sequence = CATTGTGAGCGCTCACATCA Gene: BIFBRE_01016: Enolase (EC 4.2.1.11)	* Bifidobacterium dentium Bd1 Site: position = -106 score = 5.48783 sequence = GTATGTGAGCGTTCACATGA Gene: BDP_0870: Enolase (EC 4.2.1.11)	* Bifidobacterium gallicum DSM 20093 Site: position = -104 score = 4.47569 sequence = ACATGTGAACACTCACTGCA Gene: BIFGAL_01223: Enolase (EC 4.2.1.11)	* Bifidobacterium longum NCC2705 Site: position = -108 score = 5.64402 sequence = CATTGTGAGCGCTAACGCTA Gene: BL1022: Enolase (EC 4.2.1.11)	* Gardnerella vaginalis 409-05 Site: position = -106 score = 5.28629 sequence = TATTGTGAACGTTCACGGCA Gene: HMPREF0424_0662: Enolase (EC 4.2.1.11)	Enolase (EC 4.2.1.11)

CRON 2.
araQ	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -110 score = 5.46808 sequence = CAGTGTGAGCGCTAACGCAA Gene: Blon_0423: Transcriptional regulator of central carbohydrate metabolism, LacI family	* Bifidobacterium adolescentis ATCC 15703 Site: position = -75 score = 5.42377 sequence = GGTTGTTAGCGCTAACTGAA Gene: BAD_1413: Transcriptional regulator of central carbohydrate metabolism, LacI family	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00190: Transcriptional regulator of central carbohydrate metabolism, LacI family	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0050: Transcriptional regulator of central carbohydrate metabolism, LacI family	* Bifidobacterium bifidum NCIMB 41171 Site: position = -122 score = 5.42384 sequence = ATCTGTGAGCGCTCACGCGT Gene: BbifN4_010100001372: Transcriptional regulator of central carbohydrate metabolism, LacI family	* Bifidobacterium breve DSM 20213 Site: position = -146 score = 5.43068 sequence = CAATGTGAGCGCTCACGCGA Gene: BIFBRE_02212: Transcriptional regulator of central carbohydrate metabolism, LacI family	* Bifidobacterium dentium Bd1 Site: position = -75 score = 5.1259 sequence = GCCTGTTAGCGCTAACTGAA Gene: BDP_1926: Transcriptional regulator of central carbohydrate metabolism, LacI family	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00652: Transcriptional regulator of central carbohydrate metabolism, LacI family	* Bifidobacterium longum NCC2705 Site: position = -71 score = 5.46808 sequence = CAGTGTGAGCGCTAACGCAA Gene: BL0275: Transcriptional regulator of central carbohydrate metabolism, LacI family	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0351: Transcriptional regulator of central carbohydrate metabolism, LacI family	Transcriptional regulator of central carbohydrate metabolism, LacI family

CRON 3.
glgB	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -108 score = 5.3485 sequence = CTATGAGAGCGCTCACAACC Gene: Blon_1761: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0667: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01130: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1505: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100003289: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	* Bifidobacterium breve DSM 20213 Site: position = -108 score = 5.42046 sequence = CAATGAGAGCGCTCACAATC Gene: BIFBRE_01039: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Bifidobacterium dentium Bd1 Gene: BDP_0893: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00368: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	* Bifidobacterium longum NCC2705 Site: position = -147 score = 5.3485 sequence = CTATGAGAGCGCTCACAACC Gene: BL0999: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0597: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)	1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Blon_1762	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_1762: response regulator of two-component system	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0666: response regulator of two-component system	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01129: response regulator of two-component system	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1506: response regulator of two-component system	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100003284: response regulator of two-component system	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01038: response regulator of two-component system	Bifidobacterium dentium Bd1 Gene: BDP_0892: response regulator of two-component system	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00369: response regulator of two-component system	Bifidobacterium longum NCC2705 Gene: BL1000: response regulator of two-component system	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0596: response regulator of two-component system	response regulator of two-component system
Blon_1763	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_1763: histidine kinase sensor of two-component system	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0665: histidine kinase sensor of two-component system	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01128: histidine kinase sensor of two-component system	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1507: histidine kinase sensor of two-component system	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100003279: histidine kinase sensor of two-component system	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01037: histidine kinase sensor of two-component system	Bifidobacterium dentium Bd1 Gene: BDP_0891: histidine kinase sensor of two-component system	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00370: histidine kinase sensor of two-component system	Bifidobacterium longum NCC2705 Gene: BL1001: histidine kinase sensor of two-component system	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0594: histidine kinase sensor of two-component system	histidine kinase sensor of two-component system

CRON 4.
tkt	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -156 score = 5.29383 sequence = CACTGTGAACGTTAACAGAA Gene: Blon_1096: Transketolase (EC 2.2.1.1)	* Bifidobacterium adolescentis ATCC 15703 Site: position = -156 score = 6.05322 sequence = AATTGTGAGCGCTAACAGCA Gene: BAD_0829: Transketolase (EC 2.2.1.1)	2 Bifidobacterium angulatum DSM 20098* Site: position = -166 score = 4.73793 sequence = AAACGAGAACGCTAACAGAA Gene: BIFANG_01436: Transketolase (EC 2.2.1.1) Gene: BIFANG_01437: Transketolase (EC 2.2.1.1)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1357: Transketolase (EC 2.2.1.1)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -159 score = 5.8219 sequence = ACTTGTGAGCGCTAACATAA Gene: BbifN4_010100004774: Transketolase (EC 2.2.1.1)	* Bifidobacterium breve DSM 20213 Site: position = -156 score = 5.76995 sequence = AATTGTGAACGCTAACAGAA Gene: BIFBRE_01332: Transketolase (EC 2.2.1.1)	* Bifidobacterium dentium Bd1 Site: position = -157 score = 5.70118 sequence = CATTGTGAACGCTAACAGAA Gene: BDP_1145: Transketolase (EC 2.2.1.1)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_01683: Transketolase (EC 2.2.1.1)	* Bifidobacterium longum NCC2705 Site: position = -156 score = 5.6202 sequence = CACTGTGAACGCTAACAGAA Gene: BL0716: Transketolase (EC 2.2.1.1)	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0902: Transketolase (EC 2.2.1.1)	Transketolase (EC 2.2.1.1)
tal	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_1095: Transaldolase (EC 2.2.1.2)	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0830: Transaldolase (EC 2.2.1.2)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01438: Transaldolase (EC 2.2.1.2)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1358: Transaldolase (EC 2.2.1.2)	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100004779: Transaldolase (EC 2.2.1.2)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01331: Transaldolase (EC 2.2.1.2)	Bifidobacterium dentium Bd1 Gene: BDP_1144: Transaldolase (EC 2.2.1.2)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_01684: Transaldolase (EC 2.2.1.2)	Bifidobacterium longum NCC2705 Gene: BL0715: Transaldolase (EC 2.2.1.2)	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0903: Transaldolase (EC 2.2.1.2)	Transaldolase (EC 2.2.1.2)

CRON 5.
gap	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -155 score = 6.31934 sequence = AATTGTGAGCGCTCACAAAA Gene: Blon_0900: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	* Bifidobacterium adolescentis ATCC 15703 Site: position = -156 score = 5.08363 sequence = GCATGTGAGCGTTCACTGAA Gene: BAD_1079: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01637: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0740: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -155 score = 5.29604 sequence = ATTTGTTAGCGTTAACGGAA Gene: BbifN4_010100002494: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	* Bifidobacterium breve DSM 20213 Site: position = -155 score = 6.16959 sequence = CAATGTGAGCGCTCACAAAA Gene: BIFBRE_01690: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	* Bifidobacterium dentium Bd1 Site: position = -156 score = 5.5258 sequence = CATTGTGAGCGTTCACGGAA Gene: BDP_1514: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00267: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	* Bifidobacterium longum NCC2705 Site: position = -155 score = 6.23836 sequence = AATTGTGAGCGCTCACAGAA Gene: BL1363: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	* Gardnerella vaginalis 409-05 Site: position = -161 score = 4.89485 sequence = GCATGTTAACGCTCACTGTT Gene: HMPREF0424_0471: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)

CRON 6.
ldh	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -160 score = 5.28743 sequence = GTTTGGGAGCGCTAACAACC Gene: Blon_0840: L-lactate dehydrogenase (EC 1.1.1.27)	* Bifidobacterium adolescentis ATCC 15703 Site: position = -23 score = 6.15515 sequence = GTATGTGAGCGCTCACAAAA Gene: BAD_1117: L-lactate dehydrogenase (EC 1.1.1.27)	* Bifidobacterium angulatum DSM 20098 Site: position = -102 score = 4.7004 sequence = CGATGTGAGCGCTGCCAGTG Gene: BIFANG_00987: L-lactate dehydrogenase (EC 1.1.1.27)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0792: L-lactate dehydrogenase (EC 1.1.1.27)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -163 score = 5.7857 sequence = GTCTGTGAGCGTTCACAACA Gene: BbifN4_010100002254: L-lactate dehydrogenase (EC 1.1.1.27)	* Bifidobacterium breve DSM 20213 Site: position = -160 score = 5.86575 sequence = GGCTGTGAGCGCTAACAACT Gene: BIFBRE_01807: L-lactate dehydrogenase (EC 1.1.1.27)	* Bifidobacterium dentium Bd1 Site: position = -162 score = 6.11206 sequence = GTTTGTGAGCGCTCACATCA Gene: BDP_1558: L-lactate dehydrogenase (EC 1.1.1.27)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00305: L-lactate dehydrogenase (EC 1.1.1.27)	* Bifidobacterium longum NCC2705 Site: position = -160 score = 5.6724 sequence = ATTCGTGAGCGCTAACAACC Gene: BL1308: L-lactate dehydrogenase (EC 1.1.1.27)	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0584: L-lactate dehydrogenase (EC 1.1.1.27)	L-lactate dehydrogenase (EC 1.1.1.27)

CRON 7.
galM	2 Bifidobacterium longum subsp. infantis ATCC 15697* Gene: Blon_0897: Aldose 1-epimerase (EC 5.1.3.3) Site: position = -43 score = 5.3759 sequence = GATTGTGAGCGGTAACAATC Gene: Blon_0896: Aldose 1-epimerase (EC 5.1.3.3)	* Bifidobacterium adolescentis ATCC 15703 Site: position = -57 score = 4.96306 sequence = CATCGTGAGCGGTAACATAG Gene: BAD_1082: Aldose 1-epimerase (EC 5.1.3.3)	* Bifidobacterium angulatum DSM 20098 Site: position = -51 score = 5.06915 sequence = ATGTGTTAGCGGTAACAACC Gene: BIFANG_01641: Aldose 1-epimerase (EC 5.1.3.3)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0743: Aldose 1-epimerase (EC 5.1.3.3)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -44 score = 4.46802 sequence = GATAGCGAGCGGTAACAATA Gene: BbifN4_010100002474: Aldose 1-epimerase (EC 5.1.3.3)	2 Bifidobacterium breve DSM 20213* Gene: BIFBRE_01693: Aldose 1-epimerase (EC 5.1.3.3) Site: position = -44 score = 4.87222 sequence = GATTGCGAGCGGTAACAATA Gene: BIFBRE_01694: Aldose 1-epimerase (EC 5.1.3.3)	* Bifidobacterium dentium Bd1 Site: position = -56 score = 4.77792 sequence = GACCGTTAGCGGTAACAACC Gene: BDP_1518: Aldose 1-epimerase (EC 5.1.3.3)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00270: Aldose 1-epimerase (EC 5.1.3.3)	2 Bifidobacterium longum NCC2705* Gene: BL1360: Aldose 1-epimerase (EC 5.1.3.3) Site: position = -43 score = 5.44467 sequence = GATTGTGAGCGATAACAATT Gene: BL1359: Aldose 1-epimerase (EC 5.1.3.3)	Gardnerella vaginalis 409-05	Aldose 1-epimerase (EC 5.1.3.3)

CRON 8.
araE	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	* Bifidobacterium angulatum DSM 20098 Site: position = -347 score = 5.28202 sequence = TTTTGAGAGCGTTCACATCA Site: position = -176 score = 5.35149 sequence = AAATGTGAGCGATAACATTT Gene: BIFANG_00188: L-arabinose-proton symporter	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	L-arabinose-proton symporter
araB	Bifidobacterium longum subsp. infantis ATCC 15697	* Bifidobacterium adolescentis ATCC 15703 Site: position = -82 score = 5.25024 sequence = AATAGTGAGCGTTAACAGTG Site: position = -69 score = 5.49563 sequence = AACAGTGAGCGCTAACATTC Gene: BAD_1412: Ribulokinase (EC 2.7.1.16)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00187: Ribulokinase (EC 2.7.1.16)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -70 score = 5.92037 sequence = TTGTGTGAGCGCTAACATAT Site: position = -213 score = 5.00598 sequence = TCATGTTACCGCTCACAAGA Gene: BLA_0056: Ribulokinase (EC 2.7.1.16)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -81 score = 5.25024 sequence = AATAGTGAGCGTTAACAGTG Site: position = -68 score = 5.49563 sequence = AACAGTGAGCGCTAACATTC Gene: BDP_1924: Ribulokinase (EC 2.7.1.16)	* Bifidobacterium gallicum DSM 20093 Site: position = -2 score = 5.74335 sequence = AAATGTTAGCGCTAACATAC Gene: BIFGAL_00651: Ribulokinase (EC 2.7.1.16)	* Bifidobacterium longum NCC2705 Site: position = -70 score = 5.84275 sequence = AATTGTGAGCGCTAACACCC Gene: BL0274: Ribulokinase (EC 2.7.1.16)	Gardnerella vaginalis 409-05	Ribulokinase (EC 2.7.1.16)
araD	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1411: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00186: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0057: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100001352: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_1923: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00650: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bifidobacterium longum NCC2705 Gene: BL0273: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Gardnerella vaginalis 409-05	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araA	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1410: L-arabinose isomerase (EC 5.3.1.4)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00185: L-arabinose isomerase (EC 5.3.1.4)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0058: L-arabinose isomerase (EC 5.3.1.4)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_1922: L-arabinose isomerase (EC 5.3.1.4)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00649: L-arabinose isomerase (EC 5.3.1.4)	Bifidobacterium longum NCC2705 Gene: BL0272: L-arabinose isomerase (EC 5.3.1.4)	Gardnerella vaginalis 409-05	L-arabinose isomerase (EC 5.3.1.4)
gatC	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	* Bifidobacterium bifidum NCIMB 41171 Site: position = -238 score = 5.54357 sequence = ATATGTGAGCGCTCCCAATT Gene: BbifN4_010100001337: putative PTS system, galactitol-specific IIC component	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	putative PTS system, galactitol-specific IIC component
lyxK	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100001342: L-xylulose kinase (EC 2.7.1.-)	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	L-xylulose kinase (EC 2.7.1.-)
sgaU	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100001347: L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-)	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-)

CRON 9.
sgaR	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	* Bifidobacterium bifidum NCIMB 41171 Site: position = -130 score = 5.54357 sequence = AATTGGGAGCGCTCACATAT Gene: BbifN4_010100001332: Putative transcriptional regulator of L-ascorbate utilization, SorC family	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Putative transcriptional regulator of L-ascorbate utilization, SorC family

CRON 10.
pyk	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -127 score = 6.1265 sequence = CAATGTGAGCGCTCACAACA Gene: Blon_1745: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium adolescentis ATCC 15703 Site: position = -51 score = 6.27625 sequence = AATTGTGAGCGCTCACAACA Gene: BAD_0678: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium angulatum DSM 20098 Site: position = -131 score = 6.09631 sequence = AATTGTTAGCGCTCACATAA Gene: BIFANG_01141: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -380 score = 5.98212 sequence = GGTTGTGAGCGCTCACAGAC Gene: BLA_1494: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -131 score = 6.13774 sequence = AGATGTGAGCGCTCACAACA Gene: BbifN4_010100003349: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium breve DSM 20213 Site: position = -77 score = 6.04597 sequence = CAGTGTGAGCGCTCACAACA Gene: BIFBRE_01051: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium dentium Bd1 Site: position = -126 score = 6.19527 sequence = AAATGTGAGCGCTCACAACA Gene: BDP_0904: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium gallicum DSM 20093 Site: position = -125 score = 5.5016 sequence = CTATGTTAACGCTAACAACA Gene: BIFGAL_00353: Pyruvate kinase (EC 2.7.1.40)	* Bifidobacterium longum NCC2705 Site: position = -40 score = 6.1265 sequence = CAATGTGAGCGCTCACAACA Gene: BL0988: Pyruvate kinase (EC 2.7.1.40)	* Gardnerella vaginalis 409-05 Site: position = -146 score = 5.95873 sequence = TTCTGTGAGCGTTCACAAAA Gene: HMPREF0424_0607: Pyruvate kinase (EC 2.7.1.40)	Pyruvate kinase (EC 2.7.1.40)

CRON 11.
PF07944	Bifidobacterium longum subsp. infantis ATCC 15697	* Bifidobacterium adolescentis ATCC 15703 Site: position = -49 score = 5.52218 sequence = GATTGTGAGCGTTAACAAGA Gene: BAD_1529: Putative glycosyl hydrolase of unknown function (DUF1680)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2104: Putative glycosyl hydrolase of unknown function (DUF1680)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0174: Putative glycosyl hydrolase of unknown function (DUF1680)	Gardnerella vaginalis 409-05	Putative glycosyl hydrolase of unknown function (DUF1680)
aga	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1528: Alpha-galactosidase (EC 3.2.1.22)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0881: Alpha-galactosidase (EC 3.2.1.22)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2102: Alpha-galactosidase (EC 3.2.1.22)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Alpha-galactosidase (EC 3.2.1.22)

CRON 12.
maa	Bifidobacterium longum subsp. infantis ATCC 15697	* Bifidobacterium adolescentis ATCC 15703 Site: position = -20 score = 5.44535 sequence = TGGTGTGAGCGTTCACTATA Gene: BAD_0431: Maltose O-acetyltransferase (EC 2.3.1.79)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -49 score = 5.51768 sequence = TTGCGTGAACGCTCACAACA Gene: BDP_0569: Maltose O-acetyltransferase (EC 2.3.1.79)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00985: Maltose O-acetyltransferase (EC 2.3.1.79)	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Maltose O-acetyltransferase (EC 2.3.1.79)

CRON 13.
malQ1	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -110 score = 6.06533 sequence = CATTGTGAGCGCTCACATCT Site: position = -88 score = 4.59879 sequence = CTGTGTGAGGGCTAAAAGTA Gene: Blon_2246: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0308: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00703: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0353: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100007712: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0418: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00789: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	* Bifidobacterium longum NCC2705 Site: position = -110 score = 6.06533 sequence = CATTGTGAGCGCTCACATCT Gene: BL1570: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0251: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)

CRON 14.
birA	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -107 score = 4.91561 sequence = AGTTGTGAACGTTAACACGG Gene: Blon_2288: Biotin-protein ligase (EC 6.3.4.15)	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0251: Biotin-protein ligase (EC 6.3.4.15)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00241: Biotin-protein ligase (EC 6.3.4.15)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0298: Biotin-protein ligase (EC 6.3.4.15)	2 Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100007402: Biotin-protein ligase (EC 6.3.4.15) Gene: BbifN4_010100007372: Biotin-protein ligase (EC 6.3.4.15)	* Bifidobacterium breve DSM 20213 Site: position = -107 score = 5.22251 sequence = ACGTGTGAGCGTTCACACCG Gene: BIFBRE_00166: Biotin-protein ligase (EC 6.3.4.15)	Bifidobacterium dentium Bd1 Gene: BDP_0358: Biotin-protein ligase (EC 6.3.4.15)	2 Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00711: Biotin-protein ligase (EC 6.3.4.15) Gene: BIFGAL_00710: Biotin-protein ligase (EC 6.3.4.15)	* Bifidobacterium longum NCC2705 Site: position = -45 score = 4.99614 sequence = AGTTGTGAACGTTAACATGG Gene: BL1533: Biotin-protein ligase (EC 6.3.4.15)	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1201: Biotin-protein ligase (EC 6.3.4.15)	Biotin-protein ligase (EC 6.3.4.15)

CRON 15.
Blon_2289	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -144 score = 4.91561 sequence = CCGTGTTAACGTTCACAACT Gene: Blon_2289: hypothetical protein	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0250: hypothetical protein	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00391: hypothetical protein	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100007367: hypothetical protein	* Bifidobacterium breve DSM 20213 Site: position = -213 score = 5.22251 sequence = CGGTGTGAACGCTCACACGT Gene: BIFBRE_00165: hypothetical protein	Bifidobacterium dentium Bd1 Gene: BDP_0356: hypothetical protein	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00707: hypothetical protein	* Bifidobacterium longum NCC2705 Site: position = -123 score = 4.99614 sequence = CCATGTTAACGTTCACAACT Gene: BL1532: hypothetical protein	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1202: hypothetical protein	hypothetical protein
Blon_2290	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2290: Regulator of polyketide synthase expression	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0249: Regulator of polyketide synthase expression	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00390: Regulator of polyketide synthase expression	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0297: Regulator of polyketide synthase expression	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100007362: Regulator of polyketide synthase expression	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00164: Regulator of polyketide synthase expression	Bifidobacterium dentium Bd1 Gene: BDP_0355: Regulator of polyketide synthase expression	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00705: Regulator of polyketide synthase expression	Bifidobacterium longum NCC2705 Gene: BL1531: Regulator of polyketide synthase expression	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1203: Regulator of polyketide synthase expression	Regulator of polyketide synthase expression

CRON 16.
malE	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -227 score = 5.1073 sequence = ATATGTTAGCGCTCTCATGA Gene: Blon_2444: Maltose/maltodextrin ABC transporter, substrate binding protein	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	* Bifidobacterium breve DSM 20213 Site: position = -229 score = 4.92302 sequence = GCATGTTAGCGCTCTCATTG Gene: BIFBRE_00012: Maltose/maltodextrin ABC transporter, substrate binding protein	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -246 score = 5.36728 sequence = ATATGTTAGCGCTCTCATAA Gene: BL0141: Maltose/maltodextrin ABC transporter, substrate binding protein	Gardnerella vaginalis 409-05	Maltose/maltodextrin ABC transporter, substrate binding protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AraQ - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --