Regulon of AraQ in Bifidobacterium bifidum NCIMB 41171

Properties
Regulator type:	Transcription factor
TF locus tag:	BbifN4_010100001372
Regulator family:	LacI
Regulation mode:
Biological process:	Central carbohydrate metabolism; Arabinose utilization; Arabinose oligosaccharide utilization
Effector:
Regulog:	AraQ - Bifidobacteriaceae
Statistics of regulated genes:
- Genes	13
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 83 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Central carbohydrate metabolism
By pathway - Arabinose utilization
By pathway - Arabinose oligosaccharide utilization

Regulated operons
	Locus Tag	Name	Function
Position: -155 Score: 5.3 Sequence: ATTTGTTAGCGTTAACGGAA Locus tag: BbifN4_010100002494 Name: gap Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
	BbifN4_010100002494	gap	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -163 Score: 5.8 Sequence: GTCTGTGAGCGTTCACAACA Locus tag: BbifN4_010100002254 Name: ldh Funciton: L-lactate dehydrogenase (EC 1.1.1.27)
	BbifN4_010100002254	ldh	L-lactate dehydrogenase (EC 1.1.1.27)
Position: -44 Score: 4.5 Sequence: GATAGCGAGCGGTAACAATA Locus tag: BbifN4_010100002474 Name: galM Funciton: Aldose 1-epimerase (EC 5.1.3.3)
	BbifN4_010100002474	galM	Aldose 1-epimerase (EC 5.1.3.3)
Position: -131 Score: 6.1 Sequence: AGATGTGAGCGCTCACAACA Locus tag: BbifN4_010100003349 Name: pyk Funciton: Pyruvate kinase (EC 2.7.1.40)
	BbifN4_010100003349	pyk	Pyruvate kinase (EC 2.7.1.40)
Position: -159 Score: 5.8 Sequence: ACTTGTGAGCGCTAACATAA Locus tag: BbifN4_010100004774 Name: tkt Funciton: Transketolase (EC 2.2.1.1) Locus tag: BbifN4_010100004779 Name: tal Funciton: Transaldolase (EC 2.2.1.2)
	BbifN4_010100004774	tkt	Transketolase (EC 2.2.1.1)
	BbifN4_010100004779	tal	Transaldolase (EC 2.2.1.2)
Position: -122 Score: 5.4 Sequence: ATCTGTGAGCGCTCACGCGT Locus tag: BbifN4_010100001372 Name: araQ Funciton: Transcriptional regulator of central carbohydrate metabolism, LacI family
	BbifN4_010100001372	araQ	Transcriptional regulator of central carbohydrate metabolism, LacI family
Position: -105 Score: 5.3 Sequence: GAATGTTAGCGCTCATATTA Locus tag: BbifN4_010100003174 Name: eno Funciton: Enolase (EC 4.2.1.11)
	BbifN4_010100003174	eno	Enolase (EC 4.2.1.11)
Position: -238 Score: 5.5 Sequence: ATATGTGAGCGCTCCCAATT Locus tag: BbifN4_010100001337 Name: gatC Funciton: putative PTS system, galactitol-specific IIC component Locus tag: BbifN4_010100001342 Name: lyxK Funciton: L-xylulose kinase (EC 2.7.1.-) Locus tag: BbifN4_010100001347 Name: sgaU Funciton: L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) Locus tag: BbifN4_010100001352 Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
	BbifN4_010100001337	gatC	putative PTS system, galactitol-specific IIC component
	BbifN4_010100001342	lyxK	L-xylulose kinase (EC 2.7.1.-)
	BbifN4_010100001347	sgaU	L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-)
	BbifN4_010100001352	araD	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Position: -130 Score: 5.5 Sequence: AATTGGGAGCGCTCACATAT Locus tag: BbifN4_010100001332 Name: sgaR Funciton: Putative transcriptional regulator of L-ascorbate utilization, SorC family
	BbifN4_010100001332	sgaR	Putative transcriptional regulator of L-ascorbate utilization, SorC family

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of AraQ in Bifidobacterium bifidum NCIMB 41171

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --