Regulog Fur - Listeriaceae

Member of regulog collections
- By taxonomy - Listeriaceae
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
Genome | Genes | Operons |
---|---|---|
Listeria innocua Clip11262 | 30 | 16 |
Listeria monocytogenes EGD-e | 30 | 16 |
Listeria seeligeri serovar 1/2b str. SLCC3954 | 24 | 13 |
Listeria welshimeri serovar 6b str. SLCC5334 | 25 | 14 |
Genes | Function | ||||
---|---|---|---|---|---|
CRON 1. | |||||
COG0635 |
*
Listeria innocua Clip11262 Site: position = -10 score = 4.84908 sequence = ATTGATAAAAATGATAAAT Gene: lin1513: Oxygen-independent coproporphyrinogen III oxidase, putative |
*
Listeria monocytogenes EGD-e Site: position = -10 score = 4.84908 sequence = ATTGATAAAAATGATAAAT Gene: lmo1476: Oxygen-independent coproporphyrinogen III oxidase, putative |
|
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -10 score = 5.35049 sequence = ATTGATAATAATGATAAAT Gene: lwe1491: Oxygen-independent coproporphyrinogen III oxidase, putative |
Oxygen-independent coproporphyrinogen III oxidase, putative |
CRON 2. | |||||
lmo0362 |
*
Listeria innocua Clip11262 Site: position = -46 score = 6.21999 sequence = GTTGATAATGATTATCATT Site: position = -40 score = 5.71141 sequence = AATGATTATCATTTTCAAC Gene: lin0381: Twin-arginine translocation protein TatA |
*
Listeria monocytogenes EGD-e Site: position = -46 score = 6.23703 sequence = ACTGATAATGATTATCATT Site: position = -40 score = 6.02421 sequence = AATGATTATCATTTTCATT Gene: lmo0362: Twin-arginine translocation protein TatA |
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Twin-arginine translocation protein TatA |
lmo0361 |
Gene: lin0380: Twin-arginine translocation protein TatC |
Gene: lmo0361: Twin-arginine translocation protein TatC |
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Twin-arginine translocation protein TatC |
CRON 3. | |||||
efeU |
*
Listeria innocua Clip11262 Site: position = -47 score = 5.92046 sequence = TATGATAATGATAATCATT Site: position = -41 score = 6.28768 sequence = AATGATAATCATTTTCAAT Gene: lin0384: Ferrous iron transport permease EfeU |
*
Listeria monocytogenes EGD-e Site: position = -47 score = 5.92046 sequence = TATGATAATGATAATCATT Site: position = -41 score = 6.28768 sequence = AATGATAATCATTTTCAAT Gene: lmo0365: Ferrous iron transport permease EfeU |
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|
Ferrous iron transport permease EfeU |
efeO |
Gene: lin0385: Ferrous iron transport periplasmic protein EfeO |
Gene: lmo0366: Ferrous iron transport periplasmic protein EfeO |
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Ferrous iron transport periplasmic protein EfeO |
efeB |
Gene: lin0386: Ferrous iron transport peroxidase EfeB |
Gene: lmo0367: Ferrous iron transport peroxidase EfeB |
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Ferrous iron transport peroxidase EfeB |
CRON 4. | |||||
isdC |
*
Listeria innocua Clip11262 Site: position = -131 score = 5.5696 sequence = GTTGACAATGATAATCATT Site: position = -125 score = 6.49053 sequence = AATGATAATCATTATCAAT Gene: lin2290: Haem uptake protein IsdC |
*
Listeria monocytogenes EGD-e Site: position = -129 score = 5.5696 sequence = GTTGACAATGATAATCATT Site: position = -123 score = 6.49053 sequence = AATGATAATCATTATCAAT Gene: lmo2186: Haem uptake protein IsdC |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -127 score = 5.5696 sequence = GTTGACAATGATAATCATT Site: position = -121 score = 6.49053 sequence = AATGATAATCATTATCAAT Gene: lse_2166: Haem uptake protein IsdC |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -126 score = 5.84014 sequence = ATTGACAATGATAATCATT Site: position = -120 score = 6.49053 sequence = AATGATAATCATTATCAAT Gene: lwe2203: Haem uptake protein IsdC |
Haem uptake protein IsdC |
isdA |
Gene: lin2289: Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC |
Gene: lmo2185: Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC |
Gene: lse_2165: Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC |
Gene: lwe2202: Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC |
Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC |
isdE |
Gene: lin2288: Heme ABC transporter, haem-binding protein IsdE |
Gene: lmo2184: Heme ABC transporter, haem-binding protein IsdE |
Gene: lse_2164: Heme ABC transporter, haem-binding protein IsdE |
Gene: lwe2201: Heme ABC transporter, haem-binding protein IsdE |
Heme ABC transporter, haem-binding protein IsdE |
isdF |
Gene: lin2287: Heme ABC transporter, permease component IsdF |
Gene: lmo2183: Heme ABC transporter, permease component IsdF |
Gene: lse_2163: Heme ABC transporter, permease component IsdF |
Gene: lwe2200: Heme ABC transporter, permease component IsdF |
Heme ABC transporter, permease component IsdF |
ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components |
Gene: lin2286: Heme transporter analogous to IsdDEF, ATP-binding protein |
Gene: lmo2182: Heme transporter analogous to IsdDEF, ATP-binding protein |
Gene: lse_2162: Heme transporter analogous to IsdDEF, ATP-binding protein |
Gene: lwe2199: Heme transporter analogous to IsdDEF, ATP-binding protein |
Heme transporter analogous to IsdDEF, ATP-binding protein |
srtB |
Gene: lin2285: Sortase, SrtB family |
Gene: lmo2181: Sortase, SrtB family |
Gene: lse_2161: Sortase, SrtB family |
Gene: lwe2198: Sortase, SrtB family |
Sortase, SrtB family |
CRON 5. | |||||
isdG |
*
Listeria innocua Clip11262 Site: position = -84 score = 4.85682 sequence = ATTGACATTGAGAATCATT Site: position = -78 score = 6.27589 sequence = ATTGAGAATCATTATCAAT Gene: lin0487: Heme-degrading cytoplasmic oxygenase IsdG |
*
Listeria monocytogenes EGD-e Site: position = -84 score = 4.85682 sequence = ATTGACATTGAGAATCATT Site: position = -78 score = 6.27589 sequence = ATTGAGAATCATTATCAAT Gene: lmo0484: Heme-degrading cytoplasmic oxygenase IsdG |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -84 score = 5.38737 sequence = ATTGACAATGAGAATCATT Site: position = -78 score = 6.31814 sequence = AATGAGAATCATTATCAAT Gene: lse_0393: Heme-degrading cytoplasmic oxygenase IsdG |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -84 score = 5.38737 sequence = ATTGACAATGAGAATCATT Site: position = -78 score = 6.31814 sequence = AATGAGAATCATTATCAAT Gene: lwe0452: Heme-degrading cytoplasmic oxygenase IsdG |
Heme-degrading cytoplasmic oxygenase IsdG |
CRON 6. | |||||
fepB |
*
Listeria innocua Clip11262 Site: position = -42 score = 5.15889 sequence = AACGATAATGAAAATCATT Site: position = -36 score = 6.08483 sequence = AATGAAAATCATTTTCAAT Gene: lin0545: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria monocytogenes EGD-e Site: position = -42 score = 5.15889 sequence = AACGATAATGAAAATCATT Site: position = -36 score = 6.08483 sequence = AATGAAAATCATTTTCAAT Gene: lmo0541: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -41 score = 5.15889 sequence = AACGATAATGAAAATCATT Site: position = -35 score = 6.08483 sequence = AATGAAAATCATTTTCAAT Gene: lse_0455: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -42 score = 5.15889 sequence = AACGATAATGAAAATCATT Site: position = -36 score = 6.08483 sequence = AATGAAAATCATTTTCAAT Gene: lwe0511: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
CRON 7. | |||||
fhuB |
*
Listeria innocua Clip11262 Site: position = -59 score = 6.03803 sequence = ATTGATAATTATTATCACT Gene: lin2072: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
*
Listeria monocytogenes EGD-e Site: position = -59 score = 6.03803 sequence = ATTGATAATTATTATCACT Gene: lmo1958: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -59 score = 5.76749 sequence = ATTGATAATTATTATCACC Gene: lse_1945: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -59 score = 6.03803 sequence = ATTGATAATTATTATCACT Gene: lwe1984: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
fhuG |
Gene: lin2071: Ferrichrome transport system permease protein FhuG |
Gene: lmo1957: Ferrichrome transport system permease protein FhuG |
Gene: lse_1944: Ferrichrome transport system permease protein FhuG |
Gene: lwe1983: Ferrichrome transport system permease protein FhuG |
Ferrichrome transport system permease protein FhuG |
CRON 8. | |||||
fhuA |
*
Listeria innocua Clip11262 Site: position = -140 score = 5.80222 sequence = GGTGATAATCATTCTCAAT Site: position = -35 score = 5.06035 sequence = ACTGAGAATTGTTATCAGT Gene: lin2073: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria monocytogenes EGD-e Site: position = -139 score = 5.80222 sequence = GGTGATAATCATTCTCAAT Site: position = -35 score = 5.56177 sequence = ACTGAGAATTATTATCAGT Gene: lmo1959: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -138 score = 6.00534 sequence = GTTGATAATCATTCTCAAT Site: position = -35 score = 5.81672 sequence = AATGAGAAACATTATCAAT Gene: lse_1946: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -126 score = 5.80222 sequence = GGTGATAATCATTCTCAAT Site: position = -35 score = 5.81527 sequence = ACTGAGAATTATTATCAAT Gene: lwe1985: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
CRON 9. | |||||
fhuC |
*
Listeria innocua Clip11262 Site: position = -149 score = 5.06035 sequence = ACTGATAACAATTCTCAGT Site: position = -44 score = 5.80222 sequence = ATTGAGAATGATTATCACC Gene: lin2074: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
*
Listeria monocytogenes EGD-e Site: position = -148 score = 5.56177 sequence = ACTGATAATAATTCTCAGT Site: position = -44 score = 5.80222 sequence = ATTGAGAATGATTATCACC Gene: lmo1960: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -146 score = 5.81672 sequence = ATTGATAATGTTTCTCATT Site: position = -43 score = 6.00534 sequence = ATTGAGAATGATTATCAAC Gene: lse_1947: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -135 score = 5.81527 sequence = ATTGATAATAATTCTCAGT Site: position = -44 score = 5.80222 sequence = ATTGAGAATGATTATCACC Gene: lwe1986: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
PF07992 |
Gene: lin2075: Thioredoxin reductase (EC 1.8.1.9) |
Gene: lmo1961: Thioredoxin reductase (EC 1.8.1.9) |
Gene: lse_1948: Thioredoxin reductase (EC 1.8.1.9) |
Gene: lwe1987: Thioredoxin reductase (EC 1.8.1.9) |
Thioredoxin reductase (EC 1.8.1.9) |
CRON 10. | |||||
porA |
*
Listeria innocua Clip11262 Site: position = -46 score = 5.0827 sequence = AATAAGAATGATTATAAAA Gene: lin0824: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
*
Listeria monocytogenes EGD-e Site: position = -46 score = 5.0827 sequence = AATAAGAATGATTATAAAA Gene: lmo0829: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -46 score = 4.38377 sequence = AATAGGAATGATTATAAAA Gene: lse_0729: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -46 score = 5.0827 sequence = AATAAGAATGATTATAAAA Gene: lwe0820: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
CRON 11. | |||||
feoA |
*
Listeria innocua Clip11262 Site: position = -54 score = 5.68522 sequence = GTTGATAATGATTATCATG Site: position = -48 score = 5.31921 sequence = AATGATTATCATGTTCACT Gene: lin2208: Ferrous iron transport protein A |
*
Listeria monocytogenes EGD-e Site: position = -54 score = 5.68522 sequence = GTTGATAATGATTATCATG Site: position = -48 score = 5.56458 sequence = AATGATTATCATGTTCATT Gene: lmo2104: Ferrous iron transport protein A |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -49 score = 5.71848 sequence = AATGATTATCATATTCATT Site: position = -55 score = 5.91339 sequence = GTTGATAATGATTATCATA Gene: lse_2094: Ferrous iron transport protein A |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -54 score = 5.91339 sequence = GTTGATAATGATTATCATA Site: position = -48 score = 5.42273 sequence = AATGATTATCATATTCAGT Gene: lwe2125: Ferrous iron transport protein A |
Ferrous iron transport protein A |
feoB |
Gene: lin2209: Ferrous iron transport protein B |
Gene: lmo2105: Ferrous iron transport protein B |
Gene: lse_2095: Ferrous iron transport protein B |
Gene: lwe2126: Ferrous iron transport protein B |
Ferrous iron transport protein B |
CRON 12. | |||||
fepB2 |
*
Listeria innocua Clip11262 Site: position = -91 score = 5.63762 sequence = GATGAAAATAATTCTCAAT Gene: lin2525: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria monocytogenes EGD-e Site: position = -91 score = 5.63762 sequence = GATGAAAATAATTCTCAAT Gene: lmo2431: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -91 score = 5.63762 sequence = GATGAAAATAATTCTCAAT Gene: lse_2331: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -91 score = 5.90816 sequence = AATGAAAATAATTCTCAAT Gene: lwe2378: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
fepD2 |
Gene: lin2524: Ferrichrome transport system permease protein (TC 3.A.1.14.3) |
Gene: lmo2430: Ferrichrome transport system permease protein (TC 3.A.1.14.3) |
Gene: lse_2330: Ferrichrome transport system permease protein (TC 3.A.1.14.3) |
Gene: lwe2377: Ferrichrome transport system permease protein (TC 3.A.1.14.3) |
Ferrichrome transport system permease protein (TC 3.A.1.14.3) |
fepC2 |
Gene: lin2523: Ferrichrome transport ATP-binding protein (TC 3.A.1.14.3) |
Gene: lmo2429: Ferrichrome transport ATP-binding protein (TC 3.A.1.14.3) |
Gene: lse_2329: Ferrichrome transport ATP-binding protein (TC 3.A.1.14.3) |
Gene: lwe2376: Ferrichrome transport ATP-binding protein (TC 3.A.1.14.3) |
Ferrichrome transport ATP-binding protein (TC 3.A.1.14.3) |
CRON 13. | |||||
lmo2261 |
*
Listeria innocua Clip11262 Site: position = -66 score = 5.85094 sequence = AATGAAAATCATTCTCATA Gene: lin2362: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
*
Listeria monocytogenes EGD-e Site: position = -66 score = 5.85094 sequence = AATGAAAATCATTCTCATA Gene: lmo2261: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -66 score = 5.85094 sequence = AATGAAAATCATTCTCATA Gene: lse_2240: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -66 score = 5.55519 sequence = AATGAAAATCATTCTCAGA Gene: lwe2276: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
lmo2260 |
Gene: lin2361: Acetyltransferase, GNAT family |
Gene: lmo2260: Acetyltransferase, GNAT family |
Gene: lse_2239: Acetyltransferase, GNAT family |
Gene: lwe2275: Acetyltransferase, GNAT family |
Acetyltransferase, GNAT family |
CRON 14. | |||||
fur |
*
Listeria innocua Clip11262 Site: position = -93 score = 5.15078 sequence = AATTATAATTATTATAAAC Site: position = -60 score = 5.64211 sequence = AATGATAATGATGATAATT Gene: lin2070: Transcriptional regulator for iron transport and metabolism, Fur family |
*
Listeria monocytogenes EGD-e Site: position = -93 score = 5.10853 sequence = ATTTATAATTATTATAAAC Site: position = -60 score = 5.64211 sequence = AATGATAATGATGATAATT Gene: lmo1956: Transcriptional regulator for iron transport and metabolism, Fur family |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -92 score = 5.10853 sequence = ATTTATAATTATTATAAAC Site: position = -59 score = 5.64211 sequence = AATGATAATGATGATAATT Gene: lse_1943: Transcriptional regulator for iron transport and metabolism, Fur family |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -93 score = 5.15078 sequence = AATTATAATTATTATAAAC Site: position = -60 score = 5.64211 sequence = AATGATAATGATGATAATT Gene: lwe1982: Transcriptional regulator for iron transport and metabolism, Fur family |
Transcriptional regulator for iron transport and metabolism, Fur family |
CRON 15. | |||||
dps |
*
Listeria innocua Clip11262 Site: position = -35 score = 4.80859 sequence = AGTGATAATCATTACAAAA Gene: lin0942: Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
*
Listeria monocytogenes EGD-e Site: position = -35 score = 5.50751 sequence = AGTGATAATCATTATAAAA Gene: lmo0943: Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -34 score = 5.54357 sequence = AGTGATAATCATTATAAAC Gene: lse_0840: Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -35 score = 5.50751 sequence = AGTGATAATCATTATAAAA Gene: lwe0921: Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
CRON 16. | |||||
katG |
*
Listeria innocua Clip11262 Site: position = -54 score = 5.04797 sequence = TTTAATAATTATTATAATT Gene: lin2920: Catalase (EC 1.11.1.6) |
*
Listeria monocytogenes EGD-e Site: position = -55 score = 5.00572 sequence = TTTAATAATTATTATAAAT Gene: lmo2785: Catalase (EC 1.11.1.6) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -54 score = 5.00572 sequence = TTTAATAATTATTATAAAT Gene: lse_2685: Catalase (EC 1.11.1.6) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -54 score = 5.00572 sequence = TTTAATAATTATTATAAAT Gene: lwe2731: Catalase (EC 1.11.1.6) |
Catalase (EC 1.11.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |