Regulon of Fur in Listeria innocua Clip11262
| Regulator type: | Transcription factor |
| TF locus tag: | lin2070 |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Regulog: | Fur - Listeriaceae |
| Statistics of regulated genes: | |
| - Genes | 30 |
| - Operons | 16 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Listeriaceae
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
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Position: -47
Score: 5.9 Sequence: TATGATAATGATAATCATT
Position: -41
Score: 6.3 Sequence: AATGATAATCATTTTCAAT
Locus tag: lin0384
Name: efeU Funciton: Ferrous iron transport permease EfeU
Locus tag: lin0385
Name: efeO Funciton: Ferrous iron transport periplasmic protein EfeO
Locus tag: lin0386
Name: efeB Funciton: Ferrous iron transport peroxidase EfeB |
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efeU
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Ferrous iron transport permease EfeU
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efeO
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Ferrous iron transport periplasmic protein EfeO
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efeB
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Ferrous iron transport peroxidase EfeB
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Position: -46
Score: 6.2 Sequence: GTTGATAATGATTATCATT
Position: -40
Score: 5.7 Sequence: AATGATTATCATTTTCAAC
Locus tag: lin0381
Name: lmo0362 Funciton: Twin-arginine translocation protein TatA
Locus tag: lin0380
Name: lmo0361 Funciton: Twin-arginine translocation protein TatC |
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lmo0362
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Twin-arginine translocation protein TatA
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lmo0361
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Twin-arginine translocation protein TatC
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Position: -10
Score: 4.8 Sequence: ATTGATAAAAATGATAAAT
Locus tag: lin1513
Name: COG0635 Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative |
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COG0635
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Oxygen-independent coproporphyrinogen III oxidase, putative
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Position: -131
Score: 5.6 Sequence: GTTGACAATGATAATCATT
Position: -125
Score: 6.5 Sequence: AATGATAATCATTATCAAT
Locus tag: lin2290
Name: isdC Funciton: Haem uptake protein IsdC
Locus tag: lin2289
Name: isdA Funciton: Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC
Locus tag: lin2288
Name: isdE Funciton: Heme ABC transporter, haem-binding protein IsdE
Locus tag: lin2287
Name: isdF Funciton: Heme ABC transporter, permease component IsdF
Locus tag: lin2286
Name: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Funciton: Heme transporter analogous to IsdDEF, ATP-binding protein
Locus tag: lin2285
Name: srtB Funciton: Sortase, SrtB family |
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isdC
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Haem uptake protein IsdC
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isdA
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Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC
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isdE
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Heme ABC transporter, haem-binding protein IsdE
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isdF
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Heme ABC transporter, permease component IsdF
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ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components
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Heme transporter analogous to IsdDEF, ATP-binding protein
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srtB
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Sortase, SrtB family
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Position: -42
Score: 5.2 Sequence: AACGATAATGAAAATCATT
Position: -36
Score: 6.1 Sequence: AATGAAAATCATTTTCAAT
Locus tag: lin0545
Name: fepB Funciton: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
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fepB
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Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
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Position: -35
Score: 4.8 Sequence: AGTGATAATCATTACAAAA
Locus tag: lin0942
Name: dps Funciton: Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) |
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dps
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Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)
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Position: -93
Score: 5.2 Sequence: AATTATAATTATTATAAAC
Position: -60
Score: 5.6 Sequence: AATGATAATGATGATAATT
Locus tag: lin2070
Name: fur Funciton: Transcriptional regulator for iron transport and metabolism, Fur family |
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fur
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Transcriptional regulator for iron transport and metabolism, Fur family
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Position: -66
Score: 5.9 Sequence: AATGAAAATCATTCTCATA
Locus tag: lin2362
Name: lmo2261 Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: lin2361
Name: lmo2260 Funciton: Acetyltransferase, GNAT family |
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lmo2261
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PaaD-like protein (DUF59) involved in Fe-S cluster assembly
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lmo2260
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Acetyltransferase, GNAT family
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Position: -91
Score: 5.6 Sequence: GATGAAAATAATTCTCAAT
Locus tag: lin2525
Name: fepB2 Funciton: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
Locus tag: lin2524
Name: fepD2 Funciton: Ferrichrome transport system permease protein (TC 3.A.1.14.3)
Locus tag: lin2523
Name: fepC2 Funciton: Ferrichrome transport ATP-binding protein (TC 3.A.1.14.3) |
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fepB2
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Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
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fepD2
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Ferrichrome transport system permease protein (TC 3.A.1.14.3)
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fepC2
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Ferrichrome transport ATP-binding protein (TC 3.A.1.14.3)
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Position: -54
Score: 5.7 Sequence: GTTGATAATGATTATCATG
Position: -48
Score: 5.3 Sequence: AATGATTATCATGTTCACT
Locus tag: lin2208
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: lin2209
Name: feoB Funciton: Ferrous iron transport protein B |
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feoA
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Ferrous iron transport protein A
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feoB
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Ferrous iron transport protein B
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Position: -46
Score: 5.1 Sequence: AATAAGAATGATTATAAAA
Locus tag: lin0824
Name: porA Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
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porA
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Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
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Position: -149
Score: 5.1 Sequence: ACTGATAACAATTCTCAGT
Position: -44
Score: 5.8 Sequence: ATTGAGAATGATTATCACC
Locus tag: lin2074
Name: fhuC Funciton: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)
Locus tag: lin2075
Name: PF07992 Funciton: Thioredoxin reductase (EC 1.8.1.9) |
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fhuC
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Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)
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PF07992
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Thioredoxin reductase (EC 1.8.1.9)
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Position: -140
Score: 5.8 Sequence: GGTGATAATCATTCTCAAT
Position: -35
Score: 5.1 Sequence: ACTGAGAATTGTTATCAGT
Locus tag: lin2073
Name: fhuA Funciton: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) |
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fhuA
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Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
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Position: -84
Score: 4.9 Sequence: ATTGACATTGAGAATCATT
Position: -78
Score: 6.3 Sequence: ATTGAGAATCATTATCAAT
Locus tag: lin0487
Name: isdG Funciton: Heme-degrading cytoplasmic oxygenase IsdG |
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isdG
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Heme-degrading cytoplasmic oxygenase IsdG
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Position: -59
Score: 6 Sequence: ATTGATAATTATTATCACT
Locus tag: lin2072
Name: fhuB Funciton: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
Locus tag: lin2071
Name: fhuG Funciton: Ferrichrome transport system permease protein FhuG |
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fhuB
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Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
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fhuG
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Ferrichrome transport system permease protein FhuG
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Position: -54
Score: 5 Sequence: TTTAATAATTATTATAATT
Locus tag: lin2920
Name: katG Funciton: Catalase (EC 1.11.1.6) |
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katG
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Catalase (EC 1.11.1.6)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |