Regulog GguR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - GguR
- By TF family - GntR/Others
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 7 | 4 |
| Ralstonia eutropha H16 | 7 | 4 |
| Ralstonia eutropha JMP134 | 8 | 5 |
| Ralstonia metallidurans CH34 | 8 | 6 |
| Ralstonia pickettii 12J | 6 | 2 |
| Ralstonia solanacearum GMI1000 | 6 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| kdgD |
*
Cupriavidus taiwanensis Site: position = -94 score = 4.88863 sequence = TTGTCGTACGATGACTG Gene: RALTA_B0137: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Ralstonia eutropha H16 Site: position = -94 score = 4.83203 sequence = TTGTCATACGATGACTG Site: position = -289 score = 5.0338 sequence = ACGTTGTCCTACAACAT Gene: H16_B0131: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Ralstonia eutropha JMP134 Site: position = -102 score = 4.82381 sequence = TAGTTGTACGATGACGT Gene: Reut_B3688: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Ralstonia metallidurans CH34 Site: position = -109 score = 4.62496 sequence = TGGTTGTACGATGACTT Gene: Rmet_4736: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
Gene: Rpic_4452: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
Gene: RS05369: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
| kgsD |
Gene: RALTA_B0136: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Gene: H16_B0130: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
*
Ralstonia eutropha JMP134 Site: position = -97 score = 4.252 sequence = ATGTCATATGATGTCCT Gene: Reut_B3713: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
*
Ralstonia metallidurans CH34 Site: position = -91 score = 4.37126 sequence = ATGATGTCTTACGACAA Site: position = -98 score = 4.54771 sequence = ATGTCATATGATGTCTT Gene: Rmet_0832: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Gene: Rpic_4451: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Gene: RS05368: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
| gguR |
*
Cupriavidus taiwanensis Site: position = -91 score = 4.90804 sequence = CTGTCATCGTATGACTG Gene: RALTA_B0132: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Ralstonia eutropha H16 Site: position = -81 score = 4.90804 sequence = CTGTCATCGTATGACTG Gene: H16_B0126: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Ralstonia eutropha JMP134 Site: position = -80 score = 5.08749 sequence = CAGTCGTCGTATGACTT Gene: Reut_B3714: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Ralstonia metallidurans CH34 Site: position = -30 score = 4.79178 sequence = CGGTCGTCGTATGACTT Gene: Rmet_0833: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Ralstonia pickettii 12J Site: position = -85 score = 4.77866 sequence = CAGTCGTCGTACAACAC Gene: Rpic_0945: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Ralstonia solanacearum GMI1000 Site: position = -90 score = 5.07595 sequence = CAGTCGTCGTACAACAT Gene: RS04109: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
| gudP1 |
|
|
*
Ralstonia eutropha JMP134 Site: position = -67 score = 5.11015 sequence = CAGTCATACGACGACAT Site: position = -283 score = 4.82381 sequence = ACGTCATCGTACAACTA Gene: Reut_B3689: D-glucarate permease |
*
Ralstonia metallidurans CH34 Site: position = -78 score = 5.19145 sequence = AAGTCGTATGACGACAT Gene: Rmet_4735: D-glucarate permease |
|
|
D-glucarate permease |
| garD |
*
Cupriavidus taiwanensis Site: position = -155 score = 4.85603 sequence = ATGTTGTCGTACAACAC Site: position = -54 score = 4.99154 sequence = ATGTTGTCAGACAACGT Gene: RALTA_B0782: D-galactarate dehydratase (EC 4.2.1.42) |
*
Ralstonia eutropha H16 Site: position = -57 score = 4.96887 sequence = AAGTTGTCAGACAACGT Site: position = -157 score = 4.55524 sequence = GTGTTATCGTACAACTA Gene: H16_B0965: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: Reut_B3690: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: Rmet_4734: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: Rpic_4448: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: RSp0830: D-galactarate dehydratase (EC 4.2.1.42) |
D-galactarate dehydratase (EC 4.2.1.42) |
| CRON 2. | |||||||
| gudD |
*
Cupriavidus taiwanensis Site: position = -109 score = 4.90804 sequence = CAGTCATACGATGACAG Gene: RALTA_B0133: Glucarate dehydratase (EC 4.2.1.40) |
*
Ralstonia eutropha H16 Site: position = -90 score = 4.90804 sequence = CAGTCATACGATGACAG Gene: H16_B0127: Glucarate dehydratase (EC 4.2.1.40) |
*
Ralstonia eutropha JMP134 Site: position = -87 score = 5.08749 sequence = AAGTCATACGACGACTG Gene: Reut_B3715: Glucarate dehydratase (EC 4.2.1.40) |
*
Ralstonia metallidurans CH34 Site: position = -80 score = 4.79178 sequence = AAGTCATACGACGACCG Gene: Rmet_0834: Glucarate dehydratase (EC 4.2.1.40) |
*
Ralstonia pickettii 12J Site: position = -17 score = 4.77866 sequence = GTGTTGTACGACGACTG Gene: Rpic_0946: Glucarate dehydratase (EC 4.2.1.40) |
*
Ralstonia solanacearum GMI1000 Site: position = -26 score = 5.07595 sequence = ATGTTGTACGACGACTG Gene: RSc1079: Glucarate dehydratase (EC 4.2.1.40) |
Glucarate dehydratase (EC 4.2.1.40) |
| exuT |
|
|
|
|
Gene: Rpic_0947: Hexuronate transporter, MFS family |
Gene: RSc1080: Hexuronate transporter, MFS family |
Hexuronate transporter, MFS family |
| agl |
|
|
|
|
Gene: Rpic_0948: Alpha-glucosidase (EC 3.2.1.20) |
Gene: RS04106: Alpha-glucosidase (EC 3.2.1.20) |
Alpha-glucosidase (EC 3.2.1.20) |
| omp |
|
|
|
|
Gene: Rpic_0949: Outer membrane porin protein 32 precursor |
Gene: RS04105: Outer membrane porin protein 32 precursor |
Outer membrane porin protein 32 precursor |
| aldE |
|
|
|
|
Gene: Rpic_0950: Aldose 1-epimerase |
Gene: RS04104: Aldose 1-epimerase |
Aldose 1-epimerase |
| tctC2 |
Gene: RALTA_B0134: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: H16_B0128: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Reut_B3716: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Rmet_0835: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
|
|
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
| tctC1 |
Gene: RALTA_B0135: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: H16_B0129: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
*
Ralstonia eutropha JMP134 Site: position = -45 score = 4.95514 sequence = ATGTTGTATGACGACTG Site: position = -180 score = 4.99975 sequence = ATGTCATCAGACAACAG Gene: Reut_A1006: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
*
Ralstonia metallidurans CH34 Site: position = -161 score = 5.16604 sequence = AAGTCATCCGACGACTG Site: position = -44 score = 4.06023 sequence = TAGTTGTACGACATCCT Gene: Rmet_0971: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
|
|
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |