Regulog GcvR - Pseudomonadales
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - TyrR
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | 3 | 1 |
| Pseudomonas aeruginosa PAO1 | 5 | 1 |
| Pseudomonas entomophila L48 | 4 | 1 |
| Pseudomonas fluorescens Pf-5 | 4 | 1 |
| Pseudomonas mendocina ymp | 4 | 1 |
| Pseudomonas putida KT2440 | 4 | 1 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 3 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| gcvH |
|
*2
Pseudomonas aeruginosa PAO1 Site: position = -264 score = 4.3521 sequence = CTGTAACGCTTCGGTTACGA Site: position = -163 score = 5.44855 sequence = CTGTAACGAAAGCGTTCCAT Site: position = -244 score = 5.61985 sequence = GTGGAACGAATTCGTTCCGA Gene: PA2446: Glycine cleavage system H protein Gene: PA5214: Glycine cleavage system H protein |
*
Pseudomonas entomophila L48 Site: position = -265 score = 5.35063 sequence = CCGTATCGAATTCAATCCAC Site: position = -246 score = 4.63074 sequence = CCGTAATCAAATCATTCCAC Site: position = -165 score = 5.67398 sequence = GTGTATCGATTTCGTTCCAT Gene: PSEEN4435: Glycine cleavage system H protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -280 score = 4.96596 sequence = CTGTACTGAAAGCGCTACAG Site: position = -261 score = 5.73571 sequence = GTGGAACGATTTCGCTACAA Site: position = -180 score = 5.5213 sequence = CTGTAGCGTTTTCGCTACGG Gene: PFL_4640: Glycine cleavage system H protein |
*
Pseudomonas mendocina ymp Site: position = -258 score = 5.78852 sequence = CTGTATCGATATCGATCCAC Site: position = -239 score = 4.72747 sequence = CCGTAACGATTTAGCAACAA Site: position = -158 score = 5.7446 sequence = TCGTATCGATATCGTTCCAG Gene: Pmen_1346: Glycine cleavage system H protein |
*
Pseudomonas putida KT2440 Site: position = -166 score = 5.66033 sequence = CTGTAACGATATCATTCCAC Site: position = -266 score = 5.16954 sequence = ATGTATCGTTTTCGCTACGT Site: position = -247 score = 5.36584 sequence = TCGTAGCGAAAACGATACAC Gene: PP0989: Glycine cleavage system H protein |
Gene: PST_4063: Glycine cleavage system H protein |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -156 score = 5.81584 sequence = CCGTAGCGATTTCGCTACAG Site: position = -256 score = 5.37022 sequence = GCGAAACGAAATCGTTCCAC Site: position = -237 score = 5.42847 sequence = CCGTAACGATTACATTACAG Gene: PSPTO1277: Glycine cleavage system H protein |
Glycine cleavage system H protein |
| gcvP |
*
Azotobacter vinelandii AvOP Site: position = -180 score = 5.71961 sequence = CCGTAACGATTTCGTTCCGA Site: position = -250 score = 5.25009 sequence = TCGTAACGATTTCGAAACAA Gene: Avin_26020: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
2
Pseudomonas aeruginosa PAO1 Gene: PA2445: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Gene: PA5213: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: PSEEN4436: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: PFL_4641: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Pmen_1345: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: PP0988: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: PST_4062: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: PSPTO1276: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
| glyA |
|
Gene: PA2444: Serine hydroxymethyltransferase (EC 2.1.2.1) |
|
|
Gene: Pmen_1344: Serine hydroxymethyltransferase (EC 2.1.2.1) |
|
|
|
Serine hydroxymethyltransferase (EC 2.1.2.1) |
| sdaA |
Gene: Avin_26040: L-serine dehydratase (EC 4.3.1.17) |
Gene: PA2443: L-serine dehydratase (EC 4.3.1.17) |
Gene: PSEEN4437: L-serine dehydratase (EC 4.3.1.17) |
Gene: PFL_4642: L-serine dehydratase (EC 4.3.1.17) |
|
Gene: PP0987: L-serine dehydratase (EC 4.3.1.17) |
Gene: PST_3559: L-serine dehydratase (EC 4.3.1.17) |
|
L-serine dehydratase (EC 4.3.1.17) |
| gcvT |
Gene: Avin_26050: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
2
Pseudomonas aeruginosa PAO1 Gene: PA5215: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Gene: PA2442: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: PSEEN4438: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: PFL_4643: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Pmen_1343: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: PP0986: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: PST_4064: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: PSPTO1275: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |