Regulog Pden_3389 - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glycolate utilization; Lactate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - GntR/Others
- By pathway - Glycolate utilization
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | 7 | 2 |
| Loktanella vestfoldensis SKA53 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | 6 | 2 |
| Rhodobacter sphaeroides 2.4.1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | ||
| Roseovarius nubinhibens ISM | 7 | 2 |
| Roseovarius sp. 217 | 9 | 2 |
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| sgaA |
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Jannaschia sp. CCS1 Site: position = -83 score = 4.15816 sequence = CGATTGTATGCATAAT Gene: Jann_1162: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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Roseovarius nubinhibens ISM Site: position = -238 score = 4.63656 sequence = ATTTTGCATTCACTAT Site: position = -142 score = 4.77773 sequence = AAAATGCATTCATTAT Gene: ISM_03990: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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Roseovarius sp. 217 Site: position = -100 score = 4.82514 sequence = ATATTGAATTCAGAAT Site: position = -93 score = 3.84485 sequence = ATTCAGAATTCAATTC Site: position = -88 score = 3.93977 sequence = GAATTCAATTCAACAA Gene: ROS217_09185: Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
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Serine--glyoxylate aminotransferase (EC 2.6.1.45) |
| tctC |
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Gene: Jann_1161: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Gene: ISM_03995: Tricarboxylate transport protein TctC, periplasmic binding subunit |
Gene: ROS217_09180: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Tricarboxylate transport protein TctC, periplasmic binding subunit |
| tctB |
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Gene: Jann_1160: Tricarboxylate transport protein TctB, small permease component |
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Gene: ISM_04000: Tricarboxylate transport protein TctB, small permease component |
Gene: ROS217_09175: Tricarboxylate transport protein TctB, small permease component |
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Tricarboxylate transport protein TctB, small permease component |
| tctA |
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Gene: Jann_1159: Tricarboxylate transport membrane protein TctA, large permease component |
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Gene: ISM_04005: Tricarboxylate transport membrane protein TctA, large permease component |
Gene: ROS217_09170: Tricarboxylate transport membrane protein TctA, large permease component |
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Tricarboxylate transport membrane protein TctA, large permease component |
| ROS217_09165 |
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Gene: ROS217_09165: Enoyl-CoA hydratase/isomerase |
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Enoyl-CoA hydratase/isomerase |
| caiB |
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Gene: ROS217_09160: L-carnitine dehydratase/bile acid-inducible protein F |
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L-carnitine dehydratase/bile acid-inducible protein F |
| Jann_1165 |
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Gene: Jann_1165: 2-keto-4-pentenoate hydratase (EC 4.2.1.-) |
Gene: SKA53_00025: 2-keto-4-pentenoate hydratase (EC 4.2.1.-) |
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Gene: ISM_03980: 2-keto-4-pentenoate hydratase (EC 4.2.1.-) |
Gene: ROS217_09155: 2-keto-4-pentenoate hydratase (EC 4.2.1.-) |
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2-keto-4-pentenoate hydratase (EC 4.2.1.-) |
| dld2 |
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Jannaschia sp. CCS1 Site: position = -58 score = 4.15816 sequence = ATTATGCATACAATCG Gene: Jann_1163: D-lactate dehydrogenase, alternative |
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Gene: ISM_04010: D-lactate dehydrogenase, alternative |
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Roseovarius sp. 217 Site: position = -71 score = 3.93977 sequence = TTGTTGAATTGAATTC Site: position = -66 score = 3.84485 sequence = GAATTGAATTCTGAAT Site: position = -59 score = 4.82514 sequence = ATTCTGAATTCAATAT Gene: ROS217_09190: D-lactate dehydrogenase, alternative |
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D-lactate dehydrogenase, alternative |
| Pden_3389 |
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Gene: Jann_1164: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Paracoccus denitrificans PD1222 Site: position = -184 score = 3.94864 sequence = ACATTGCATGCAATGT Site: position = -100 score = 4.06799 sequence = TGTTTGCATGCAACTG Site: position = -38 score = 4.45277 sequence = AGATTGCATGCAACTT Gene: Pden_3389: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Roseovarius nubinhibens ISM Site: position = -110 score = 4.77773 sequence = ATAATGAATGCATTTT Site: position = -14 score = 4.63656 sequence = ATAGTGAATGCAAAAT Gene: ISM_03985: Transcriptional regulator associated with tricarboxylic transport, GntR family |
Gene: ROS217_09195: Transcriptional regulator associated with tricarboxylic transport, GntR family |
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Transcriptional regulator associated with tricarboxylic transport, GntR family |
| CRON 2. | ||||||||||||||||
| Pden_3388 |
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Paracoccus denitrificans PD1222 Site: position = -112 score = 3.94864 sequence = ACATTGCATGCAATGT Site: position = -196 score = 4.06799 sequence = CAGTTGCATGCAAACA Gene: Pden_3388: Homoserine dehydrogenase (EC 1.1.1.3) |
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Homoserine dehydrogenase (EC 1.1.1.3) |
| tctC |
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Gene: Pden_3387: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Gene: SPOA0249: Tricarboxylate transport protein TctC, periplasmic binding subunit |
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Tricarboxylate transport protein TctC, periplasmic binding subunit |
| Pden_3386 |
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Gene: Pden_3386: Kynurenine formamidase, bacterial (EC 3.5.1.9) |
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Kynurenine formamidase, bacterial (EC 3.5.1.9) |
| tctB |
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Gene: Pden_3385: Tricarboxylate transport protein TctB, small permease component |
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Gene: SPOA0251: Tricarboxylate transport protein TctB, small permease component |
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Tricarboxylate transport protein TctB, small permease component |
| tctA |
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Gene: Pden_3384: Tricarboxylate transport membrane protein TctA, large permease component |
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Gene: SPOA0250: Tricarboxylate transport membrane protein TctA, large permease component |
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Tricarboxylate transport membrane protein TctA, large permease component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |